Detailed information on CNT30243483


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 2e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520600Avena sativaSetaria italica55.0964.9384.43411forward
CNT30221118Avena sativaHordeum vulgare32.3157.6688.8241forward
CNT30554485Avena sativaOryza glaberrima28.9538.7890.74216forward
CNT30453153Avena sativaSaccharum spontaneum78.9574.2789.47589forward
CNT30620568Avena sativaCajanus cajan52.6855.8281.93393forward
CNT30370794Avena sativaOryza glumipatula41.9643.7889.14313forward
CNT30148272Avena sativaBrachypodium distachyon77.2160.8287.33576forward
CNT30581538Avena sativaEchinochloa crusgalli78.0264.189.18582forward
CNT30556788Avena sativaPanicum hallii62.8766.1589.34469forward

Expression of CNT30243483

Peptides detected in this lncRNA

>peptide 1 (63 aa)
KFLNFEIASTIPSNLRACHYTQNSSLHFTTAVRHAVSAGLRPRHCWPLGRQGGRTGSPTDPCR*

>peptide 2 (31 aa)
MRNPSTRPMRRTWKPSTARMLCAWTRLGFPR*

>peptide 3 (33 aa)
MARRPFLISFTLSSANVTGSSARPRGSKYWPPG*

>peptide 4 (29 aa)
MAHRPWITSSALFLANASGSADSPAVSQP*

Sequence

>CNT30243483
AAATTTCTGAATTTTGAGATCGCCTCGACCATTCCTTCCAATTTGCGTGCGTGTCACTACACACAAAACAGTAGTTTACACTTTACAACGGCGGTACGCC
ATGCCGTGTCGGCCGGCCTAAGACCCAGGCATTGTTGGCCACTGGGTCGTCAAGGTGGTCGAACAGGTTCTCCAACGGACCCTTGCCGGTGACGATAGCC
TGGACGAAGAACCCAAACATAGAGAACATGGCGAGACGGCCATTCTTGATCTCCTTCACCTTAAGCTCCGCGAATGTGACTGGGTCGTCGGCGAGGCCGA
GGGGGTCGAAGTACTGGCCGCCGGGGTAGAGGCCGTTGATGCGGAACCCCTCAACAAGGCCCATGAGAAGGACCTGGAAGCCGAGCACGGCGAGGATGCT
CTGTGCGTGGACGAGGTTGGGGTTTCCGAGGTAGTCGAGACCGCCGTCGGAGAAGATCTGCGAGCCGGCCTTGAACCAGACGGGCTCCTTGAACTCGACG
CCCACCCACTTCTGGAGCACCTCGGGGAAGACGCACCCAAGAGCGCCGAGCATGGCCCACCGCCCGTGGATCACCTCGAGCGCCCTGTTCCTGGCGAATG
CCTCCGGGTCGGCAGATAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGTTGAGGTACGACGGCGTCTGCGCGGAGAAGGGGCCCAGGTA
CTTGACGCGGTCTGGACCGTACCACAAGTCGTTGCCCTGCGAGCGC