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Detailed information on CNT30544783


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043428Brassica napusPrunus dulcis24.0617.1992.2177forward
CNT30165232Brassica napusPistacia vera24.384.4493.5978forward
CNT3094050Brassica napusSolanum tuberosum24.3819.5594.8778forward
CNT30566242Brassica napusActinidia chinensis24.063.1293.5177forward
CNT30145007Brassica napusMedicago truncatula21.8811.7894.2970forward
CNT30313077Brassica napusCamelina sativa27.1919.2996.5587forward
CNT3060259Brassica napusArabidopsis lyrata69.3826.5686.04222forward
CNT3083138Brassica napusBrassica juncea99.3856.9997.8318forward
CNT30216203Brassica napusKalanchoe fedtschenkoi21.5616.0894.269forward
CNT30202986Brassica napusHelianthus annuus24.3814.6192.3178forward
CNT30625213Brassica napusDaucus carota22.513.3893.0672forward
CNT30478055Brassica napusArabidopsis halleri23.1216.9710074forward
CNT30154619Brassica napusPrunus persica24.0618.9792.2177forward

Expression of CNT30544783

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDAMFSIRIMLLYMKGSTWVLDLILYFLHSAYNCGS

>peptide 2 (38 aa)
MFFVGTNGCYVFYQDYVIIHERIHVGSRFNTLFSTFCL*

Sequence

>CNT30544783
GTAAAGGGTTACAACTTTTGTCGAAACCAGCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACAGCGA
TCTAAGTAGTTTCGAGGAACCTGCTTTGTCTTTCTCCCTTTTGAAACCAAACATTTGTGAGAGTTTTTGTTGGTTTTGCTATCTGAATTTGAATGTTTTT
TGTTGGAACAAATGGATGCTATGTTTTCTATCAGGATTATGTTATTATACATGAAAGGATCCACGTGGGTTCTCGATTTAATACTTTATTTTCTACATTC
TGCTTATAACTGTGGTTCAG