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Detailed information on CNT30202986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549577Helianthus annuusIpomoea triloba15.3622.9192.6882reverse complement
CNT30506280Helianthus annuusNicotiana attenuata14.6126.4493.5978forward
CNT30544783Helianthus annuusBrassica napus14.6124.3892.3178forward
CNT30236394Helianthus annuusBrassica oleracea14.6121.0892.3178forward
CNT3075181Helianthus annuusBrassica juncea14.6121.3792.3178forward
CNT30261820Helianthus annuusBrassica rapa14.6124.9292.3178forward
CNT30429165Helianthus annuusPapaver somniferum14.6121.9794.8778forward
CNT30725207Helianthus annuusLupinus angustifolius15.3622.7892.6882forward
CNT30115210Helianthus annuusEutrema salsugineum14.7932.1192.4179forward

Expression of CNT30202986

Peptides detected in this lncRNA

>peptide 1 (53 aa)
IHRSYQTSTTKRRLQLLPSGTSKTSVVNMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (35 aa)
MITLNNAGFCFKLFRVIFIIIGIEMKIFFGNGWCK*

Sequence

>CNT30202986
TATCCATCGAAGTTACCAAACCTCCACAACTAAACGGCGCCTACAGCTTCTGCCTTCTGGTACATCGAAAACTTCTGTCGTCAACATGAGAGCTAAGTGG
AAGAAGAAGAGAATGAGGAGATTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCTAAGTAACTGTCTTATGTTGCCGTTTTGGCAGGTTTTTGAGTTA
TCAGGTTTTGTTGGAACAATTGTCTGTCATTTTGTTTTCGGATATTATGAATTATGATCCTTTAATTTACAATTTTAATTTACTTTTTTCTTGTGGGTTT
TAATTGTTGCTGAATCTTTACTGTTCAGTGAAATTGGTTAAGTTTTCTGTGTGGTAAATTTGTTTATGATGTGGTGTCTTCTGATTAAGTTTTAGGTTTT
GGATGTTGATTTGTTGAATGATAACATTGAACAATGCTGGTTTTTGTTTTAAATTATTTCGTGTAATATTTATTATAATAGGGATTGAAATGAAAATTTT
TTTTGGAAACGGATGGTGTAAGTAAATTCAAATT