Detailed information on CNT3083138


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549577Brassica junceaIpomoea triloba13.9821.7993.5978reverse complement
CNT30544783Brassica junceaBrassica napus56.9999.3897.8318forward
CNT30259134Brassica junceaBrassica rapa82.4455.0295460forward
CNT30609975Brassica junceaGossypium raimondii13.820.3292.2177forward
CNT30620847Brassica junceaCajanus cajan14.1622.0792.4179forward
CNT30572709Brassica junceaVitis vinifera14.1626.6993.6779forward

Expression of CNT3083138

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFLLEQMDAMFSIRIMLLHERIHVGSRFNTLFSTFCA*

>peptide 2 (38 aa)
MLCFLSGLCYYMKGSMWVLDLILYFLHSAHNCGSVMIA*

Sequence

>CNT3083138
ATAAGTTAGGCCCATTACACGAGTTTCTAGGGTTTTTGTTGCATTTAAAGGAGTAAGCTGAGCTCGAGACGAACAGAATCTCCGCCGCTCCTTCTCATTT
TCTGAAATCTAAAACACTATCAGAGGAAGGAAAGGGTTACAACTTTTGTCGAAACCAGCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAA
GAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGTTTCGAGGAACCTGCTTTGTCTTTCTCCCTTTTGAAACCAAACATTTGTGAGAGTTTTGTTGG
TTTTGCTATCTGAATTTGAATGTTTTTGTTGGAACAAATGGATGCTATGTTTTCTATCAGGATTATGTTATTACATGAAAGGATCCATGTGGGTTCTCGA
TTTAATACTTTATTTTCTACATTCTGCGCATAACTGTGGTTCAGTGATGATCGCATAGATAGTGTCTTCGTAGGATTGGTTTTATATTCTTTTGAGTTGT
TAGGTCGTTGAGGCGTTGAACCTTTGATATTATGAACATGAACATGGATCTGTTAGAA