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Detailed information on CNT3094050


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318276Solanum tuberosumCorylus avellana20.37.8692.5981forward
CNT30549577Solanum tuberosumIpomoea triloba21.5524.0295.3586reverse complement
CNT30518318Solanum tuberosumJuglans regia20.0512.6893.7580forward
CNT30698018Solanum tuberosumQuercus lobata20.0513.1896.2580forward
CNT30278460Solanum tuberosumChenopodium quinoa20.313.0296.381forward
CNT3070411Solanum tuberosumQuercus suber20.0513.4996.2580forward
CNT30401878Solanum tuberosumBeta vulgaris20.0512.5496.2580forward
CNT30628539Solanum tuberosumVigna unguiculata21.0513.8295.2484forward
CNT30487554Solanum tuberosumOlea europaea20.0513.499580forward
CNT30506280Solanum tuberosumNicotiana attenuata23.8132.293.6895forward
CNT30635666Solanum tuberosumCapsicum annuum28.5711.8194.74114forward
CNT30562614Solanum tuberosumActinidia chinensis20.0513.6193.7580forward
CNT3085016Solanum tuberosumVigna radiata21.0511.9895.2484forward
CNT30544783Solanum tuberosumBrassica napus19.5524.3894.8778forward
CNT30236394Solanum tuberosumBrassica oleracea19.5521.0894.8778forward
CNT30313662Solanum tuberosumCamelina sativa20.0517.399580forward
CNT3060259Solanum tuberosumArabidopsis lyrata21.0510.0591.6784forward
CNT3075181Solanum tuberosumBrassica juncea19.5521.3794.8778forward
CNT30261820Solanum tuberosumBrassica rapa19.5524.9294.8778forward
CNT30626608Solanum tuberosumDaucus carota21.059.8892.8684forward
CNT30479698Solanum tuberosumArabidopsis halleri20.0517.4796.2580forward
CNT30423745Solanum tuberosumPapaver somniferum20.0516.679580forward
CNT30120571Solanum tuberosumCitrus clementina20.056.7192.580forward
CNT30175235Solanum tuberosumVigna angularis21.0513.2995.2484forward
CNT30725207Solanum tuberosumLupinus angustifolius19.5521.6794.8778forward
CNT30115210Solanum tuberosumEutrema salsugineum19.331.394.8177forward

Expression of CNT3094050

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LHLLSSLPHLIYSLREVKKAFRSSPIQNES*

>peptide 2 (46 aa)
MEQYGHLVGTLVMHVLAINGHLVECRECNVLYRWHDIVMIPFAFVW*

Sequence

>CNT3094050
ACTCCATCTTCTTTCATCACTGCCGCATTTGATATATTCTCTCCGAGAAGTGAAGAAAGCTTTCCGATCATCACCAATTCAGAATGAGAGCTAAGTGGAA
GAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGTCGAAAGATGAGACAGAGATCGAAGTAGAACTACATTCTGCAGTTCTCAACGCTGAATCCCTAGACC
TGTTCTGATGTGGTTGTAAGTTCAAGCAGCAGACATACTTGAATGGAGCAATATGGGCACCTAGTAGGCACTCTTGTGATGCACGTATTGGCAATCAATG
GACATTTAGTTGAGTGTCGTGAATGTAATGTCTTGTATAGATGGCATGACATTGTGATGATACCCTTTGCTTTTGTATGGTAATTGGTGGGTTTTGAAA