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Detailed information on CNT30216203


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Kalanchoe fedtschenkoiOryza sativa13.9921.9896.6760reverse complement
CNT30317675Kalanchoe fedtschenkoiCorylus avellana16.5526.3997.1871forward
CNT30191267Kalanchoe fedtschenkoiSecale cereale16.0820.2998.5569forward
CNT30544783Kalanchoe fedtschenkoiBrassica napus16.0821.5694.269forward
CNT30261820Kalanchoe fedtschenkoiBrassica rapa16.0822.0494.269forward
CNT3067939Kalanchoe fedtschenkoiLeersia perrieri15.3822.9296.9766reverse complement
CNT30115210Kalanchoe fedtschenkoiEutrema salsugineum15.8527.6494.1268forward

Expression of CNT30216203

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVFCSTSTDLSVRIQEIGLEFCFRQITGTVETF*

>peptide 2 (49 aa)
SAPDRNSESYLAPQQQSRIRVYRREDACEVEEEAHEEVEEEAPKDEAAI*

>peptide 3 (50 aa)
PLRIGTRRVIWRRSSRVGLGFIEGKMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30216203
TCCGCTCCGGATCGGAACTCGGAGAGTTATTTGGCGCCGCAGCAGCAGAGTCGGATTAGGGTTTATCGAAGGGAAGATGCGTGCGAAGTGGAAGAAGAAG
CGCATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCTAAGTAGATCTATTGTGTTGAATGGTGGTCCATGGCCCTTCGGCTTTTGTTTT
TATGAGGGAAGCTGGCAGTTCATGATTTTAAGGGACTTGCAGTGCCTGACGGTATTGTTACATGGAGTCCACGAACTTCAGTCATTTGTGGACTTGAGAT
GAGGTGCTTTTGAATGCACGAGTCGAATGGTCTTTTGTAGCACTTCAACTGATTTGTCTGTAAGAATCCAGGAGATTGGTTTGGAATTTTGTTTCAGACA
AATCACTGGAACTGTCGAAACCTTTTAGG