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Detailed information on CNT30478055


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30544783Arabidopsis halleriBrassica napus16.9723.1210074forward
CNT30236394Arabidopsis halleriBrassica oleracea16.972010074forward
CNT30310165Arabidopsis halleriCamelina sativa5038.4589.45218forward
CNT3061383Arabidopsis halleriArabidopsis lyrata76.6154.5896.41334forward
CNT3075181Arabidopsis halleriBrassica juncea16.9720.2710074forward
CNT30261820Arabidopsis halleriBrassica rapa16.9723.6410074forward
CNT30115210Arabidopsis halleriEutrema salsugineum16.9730.0810074forward

Expression of CNT30478055

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLKAYMFIGLVSLSRVCRIYISIFLLLLSLSPRLGF*

Sequence

>CNT30478055
GAAATTATTGGGCTAAAATTGTTTTAAAGGCCCATAAATAAATAAAGGCCCAATGCTAAAAGCCTACATGTTCATTGGTCTCGTTTCATTGTCTAGGGTT
TGTAGAATATATATTTCCATCTTTCTTCTTCTCCTGTCTCTCTCGCCACGATTAGGGTTTTGAGCAAAGAGGAGTGATGAGAGCTAAGTGGAAGAAGAAG
CGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAATAGACCAAATCTACTCCGCAAGTCTTTCGCTTATCCCCTCTGCTTTTGT
GTTTCGTTTGCTTCAGTTATTTCCCAGAATTTGATACTACCTTTGTCTTTGTTTCAAGATTTTGCTGTTGGATTAATGGATTTTCAATCAATGTTAACCT
TTATCTTCCTTTGCCATTTAACTTGCGATTTAATCT