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Detailed information on CNT3052962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 7e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316649Amborella trichopodaCorylus avellana21.6551.4685.8176forward
CNT30568730Amborella trichopodaActinidia chinensis15.3828.2889.6125forward
CNT30540416Amborella trichopodaBrassica napus21.2847.0186.13173forward
CNT3010350Amborella trichopodaZea mays22.0274.2787.15179forward
CNT30680463Amborella trichopodaTriticum urartu22.5126.8787.98183forward
CNT30368448Amborella trichopodaSorghum bicolor19.4328.0187.34158forward
CNT30355692Amborella trichopodaLactuca sativa20.5435.9183.23167forward
CNT30644842Amborella trichopodaCannabis sativa21.6543.5685.23176forward
CNT30594546Amborella trichopodaEragrostis curvula22.3938.4886.81182forward
CNT3050345Amborella trichopodaCucumis sativus13.0441.7387.74106forward

Expression of CNT3052962

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MSLTANLPRGGTLVPIKVGGPLDHVVTLKPRDGYKGDLIRVVSNLLDVRGHFLRNFFISGLGVLRGGGIH

>peptide 2 (31 aa)
MTDKPPKNFKFSQKSQEMRRQQVEILDPSQT*

>peptide 3 (29 aa)
MQKKKHTIESRSRKQYHRQKDPRPRFTSS*

Sequence

>CNT3052962
ATATCTATCGACTTTCATTGAAATAAATTGATTTCATCACCTAATCAATCTTTTGGGGCAATCAAATGACCGACAAACCACCAAAAAACTTTAAATTTAG
CCAAAAATCACAAGAGATGCGTAGGCAACAGGTGGAAATTCTGGACCCAAGTCAAACTTAACTCATCACTTCAAATCACCATAATCACAATCTATTCTTC
AAATAAACAACTAACAAAATAGACTCGTACATATTCCATGTCCCGGACAAAAAGATAAATAGAGTGCAAAATGTCTTCTTTTTGTTTTTACTATAGCGAA
AAAGAAGGGGGAAGAAGAAAACCTCCCTAATCAGCACGCCACCGCCTGTCTAGCACCCAGTTCTGCATTGTCCGCCCGCCAAATAACAGCAACAAACCAA
AACACAGAACAAAATAACGAAAACATAAAGGAAATGCAAAAGAAGAAACACACGATAGAGTCCAGAAGCAGAAAACAGTATCACCGACAAAAGGACCCAA
GACCTCGGTTCACTTCTTCTTAGCAGCTGACTTGGTCACCTTGGCACCACTTGGGTCCTTCTTCTCAACAGCCTTGATCACACCAACAGCCACGGTTTGC
CTCATGTCCCTGACAGCAAACCTACCAAGAGGTGGGACCCTTGTACCAATCAAGGTTGGTGGACCTCTCGATCATGTTGTCACCCTCAAACCCAGAGATG
GGTACAAAGGGGATCTTATCAGGGTTGTATCCAACCTTCTTGATGTAAGAGGACACTTCCTTCGTAATTTCTTCATATCTGGCCTTGGAGTACTTCGGGG
TGGTGGCATCCAT