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Detailed information on CNT30594546


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 2e-80

BLAST vs NONCODE:
NONCQUT008675, E-value = 2e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673325Eragrostis curvulaSetaria viridis86.267592.16408forward
CNT30521202Eragrostis curvulaSetaria italica99.7994.0290.47472forward
CNT30509929Eragrostis curvulaSolanum lycopersicum31.7170.0989.33150forward
CNT30440878Eragrostis curvulaAegilops tauschii56.4533.9792.88267forward
CNT30203420Eragrostis curvulaHelianthus annuus47.9945.2286.78227forward
CNT30721805Eragrostis curvulaTriticum spelta50.5316.5590.79239forward
CNT30644842Eragrostis curvulaCannabis sativa51.860.6487.76245forward
CNT3052962Eragrostis curvulaAmborella trichopoda38.4822.3986.81182forward
CNT30147611Eragrostis curvulaBrachypodium distachyon42.4933.593.53201forward

Expression of CNT30594546

Peptides detected in this lncRNA

>peptide 1 (81 aa)
HLNRLDLSCQTAGTKGNNHTRLEDTSLHTAHGHSSNTTNLVHILKGETQGLEDTSLHTAHGHSSNTTNLVHILKGETQGLV*

>peptide 2 (43 aa)
ISTDLTSVVRPLGPKVTTIPGLRTPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30594546
CATCTCAACAGACTTGACCTCAGTTGTCAGACCGCTGGGACCAAAGGTAACAACCATACCAGGCTTGAGGACACCAGTCTCCACACGGCCCACGGGCACA
GTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGAGGACACCAGTCTCCACACGGCCCACGGGCACAGTTCCAATACCAC
CAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAGGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCCAGCAGAGTGGGGCCCTT
GTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGGCACGAAGGGGATCTTGTCAGGGTTGTAGCCGACCTTCTTC
AGGTAGGAAGAGACTTCCTTCACGATCTCTTCATAACGGGCCTTCGAGTACTTGGGAGTGGTGGCATCCATCT