« Back to Sorghum bicolor search


Detailed information on CNT30368448


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT008675, E-value = 7e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30203418Sorghum bicolorHelianthus annuus37.4151.5985.78211forward
CNT3052962Sorghum bicolorAmborella trichopoda28.0119.4387.34158forward
CNT3039699Sorghum bicolorMarchantia polymorpha48.5832.283.21274forward

Expression of CNT30368448

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTKYFKFQLGPKVTTIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (36 aa)
SKTSKQANTATRVVTKLITTYGQHPMFDTKITEIES*

Sequence

>CNT30368448
CGAGCAAAACAAGTAAACAGGCAAACACTGCAACAAGGGTAGTAACAAAACTCATAACCACATATGGCCAACACCCGATGTTCGATACAAAAATAACAGA
AATTGAGTCTTAATAGTACCCTGGTTTTAACGAAAATAACAATACTAAATCGACCAGACAAACATTGCTAGCACAGTTTAGTTGCTCACGTCGATAACAG
CAATGACGAAATATTTTAAGTTTCAACTAGGACCGAAGGTGACAACCATACCCGGCTTGATGATACCAGTCTCAACACGTCCCACAGGAACAGTTCCAAT
ACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAAGGCCTCTTTGGCTCATTGATTAAGTCCAGAGCCTCAAGCAGGGGTTGG
GCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCTTCAAAACCAGAGATGGGAACAAAGTGGATCTTGTCTGGGTTGTATCCAACC
TTCTTCAGGTAAGAAGAGACTTCCTTAACAATCTCATCATAACGGGCCTTCGAGTACTTGGGTG