Detailed information on CNT3050345


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 2e-28

BLAST vs NONCODE:
NONCQUT008675, E-value = 2e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3052962Cucumis sativusAmborella trichopoda41.7313.0487.74106forward

Expression of CNT3050345

Peptides detected in this lncRNA

>peptide 1 (83 aa)
PLRLLDQIESLKKGRSLVPVEVGGSFNHVVTLKARDGDEGNFFWVVANLLEPQEGSVPCTSRGWWIFQSCCHPQSQRWGRREFF

>peptide 2 (46 aa)
GLLGSWIRSRASRRVGPLYQSRLVDLSIMLSPSKPEMGTKGIFSGL*

Sequence

>CNT3050345
GGCCTCTTAGGCTCTTGGATCAGATCGAGAGCCTCAAGAAGGGTCGGTCCCTTGTACCAGTCGAGGTTGGTGGATCTTTCAATCATGTTGTCACCCTCAA
AGCCAGAGATGGGGACGAAGGGAATTTTTTCTGGGTTGTAGCCAACCTTCTTGAGCCTCAAGAAGGGTCGGTCCCTTGTACCAGTCGAGGTTGGTGGATC
TTTCAATCATGTTGTCACCCTCAAAGCCAGAGATGGGGACGAAGGGAATTTTTT