Detailed information on CNT30540416


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 1e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440878Brassica napusAegilops tauschii65.4930.6691.29241forward
CNT3015474Brassica napusZea mays80.4351.4888.85296forward
CNT30721805Brassica napusTriticum spelta61.6815.7287.67227forward
CNT3052962Brassica napusAmborella trichopoda47.0121.2886.13173forward
CNT30101053Brassica napusOryza rufipogon87.2338.6386.92321forward
CNT30116111Brassica napusOryza nivara87.7736.9187.62323forward
CNT30594461Brassica napusEragrostis curvula78.848.4191.72290forward

Expression of CNT30540416

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MLSPSNPEMGTNGILSGLYPTFFRYEDTSLIISSYLALEYLGVVA

>peptide 2 (36 aa)
FTSVVNPEGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT30540416
TTCACCTCAGTGGTCAACCCTGAAGGAGCGAAGGTCACAACCATACCAGGCTTGAGCATACCAGTCTCAACACGACCCACGGGCACCGTTCCAATACCAC
CAATCTTGTAGACATCCTGAAGTGGGAGACGAAGGGGCTTGTCTGAGGGCCTCTTTGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTTGGTCCCTT
GTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCTTCGAACCCAGAGATGGGGACGAATGGGATTTTGTCAGGGTTGTATCCAACCTTCTTC
AGGTATGAAGACACCTCCTTGATAATCTCATCGTACCTAGCCTTGGAGTACTTAGGGGTAGTAGCATC