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Detailed information on CNT30552254


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 5e-144

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690763Oryza glaberrimaOryza sativa85.66100100854forward
CNT30671730Oryza glaberrimaSetaria viridis39.9270.0789.2398forward
CNT30522113Oryza glaberrimaSetaria italica53.0672.5787.9529forward
CNT30186674Oryza glaberrimaSecale cereale52.5656.191.22524forward
CNT30298862Oryza glaberrimaTriticum aestivum52.5652.0991.6524forward
CNT3010541Oryza glaberrimaZea mays61.4876.6293.47613forward
CNT30684601Oryza glaberrimaTriticum urartu52.9654.9491.29528forward
CNT30721831Oryza glaberrimaTriticum spelta34.840.9791.64347forward
CNT30369334Oryza glaberrimaOryza glumipatula47.9450.69100478forward
CNT30574623Oryza glaberrimaOryza barthii10099.1199.3997forward
CNT30603531Oryza glaberrimaOryza punctata43.2339.5496.75431forward

Expression of CNT30552254

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (82 aa)
TNQIKIILHNQVHCTSFINQPDNIVLHNLNERSKYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

Sequence

>CNT30552254
AACAAATCAGATAAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCTGAACGAACGAAGC
AAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACAC
TCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCCAGGTTCTCCAGTGGCCCCTTGCCGGTG
ACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCG
GGCCGCCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGGCAACCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCC
GAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAG
ACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCCGGCGGTGT
CCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGGACGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCT
CCCCGACGCCGCGGCGGGCTTGGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGG
GCGGCAGGGGAGGAGAGTGCCATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGCTTTTGGAATGTGTGTCTTT