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Detailed information on CNT30394912


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 5e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696202Triticum turgidumOryza sativa58.9458.7488.17524forward
CNT30522113Triticum turgidumSetaria italica58.7271.691.19522forward
CNT30186648Triticum turgidumSecale cereale63.193.3495.9561forward
CNT30100939Triticum turgidumOryza rufipogon65.874.0589.23585forward

Expression of CNT30394912

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTHDSSVHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHNVQVHMHISSDGRTDGRMAKHI*

>peptide 2 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADSPAVSHP*

Sequence

>CNT30394912
TGATCTTGAGTGATGACACACGATTCTTCCGTCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCACAGCTAGCGAGAGGACCTCTCG
CTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACAACGTACAAGTACACATGCATATCTCGTCCGATGGACGGAC
GGACGGACGGATGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGG
TTCTCAACGGGTCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCCAAGTGGGTCGAAGGCGCCGCCGGGGTAGA
TGATGTCGAGGCCCTCGCCGAGGGGGCCGCCACCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTG
CGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCG
TTCTTGGACAGGATCTCCGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGTGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTG
GGTCAGCCGACAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCATCGCGCCGCGGTGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCA
GCGCCGACGCGGCCATTTCGCTGGTGGCTGGGGCTGCCTGCGAGCTCAGTGAGATGAACTGGTGGATGGTGTGTGTTTGGGTGGAGATG