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Detailed information on CNT3010541


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 4e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690763Zea maysOryza sativa76.6271.7893.47613forward
CNT30671730Zea maysSetaria viridis49.7570.0790.45398forward
CNT30522113Zea maysSetaria italica6672.4387.69528forward
CNT30552254Zea maysOryza glaberrima76.6261.4893.47613forward
CNT30141287Zea maysLolium perenne56.1244.1588.86449forward
CNT30229088Zea maysAnanas comosus67.1261.7285.85537forward
CNT30596888Zea maysOryza meridionalis59.543.6793.49476forward
CNT30369293Zea maysOryza glumipatula58.8849.8492.36471forward
CNT30149365Zea maysBrachypodium distachyon55.570.1488.06444forward
CNT30103268Zea maysOryza rufipogon77.554.3993.23620forward
CNT30574623Zea maysOryza barthii76.6260.9392.99613forward
CNT30117587Zea maysOryza nivara77.559.993.06620forward

Expression of CNT3010541

Peptides detected in this lncRNA

>peptide 1 (52 aa)
VYQTPDLDKIGRNEKERGKIMTMNTIIPCRLNNSLHHGTNRKPACAHMHPDT*

>peptide 2 (37 aa)
MWSARFSSGPFPVTMAWTKNPNMENMARPSGSKLPPG*

>peptide 3 (33 aa)
MVQTENQRALTCIRTPKGHRRRLPHLPGTKLVA*

>peptide 4 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT3010541
GTTTATCAAACACCTGATTTAGATAAAATCGGCAGGAACGAAAAAGAGAGGGGAAAAATAATGACAATGAACACAATTATTCCTTGTCGATTGAACAATA
GTTTACATCATGGTACAAACCGAAAACCAGCGTGCGCTCACATGCATCCGGACACCTAAAGGTCACCGGCGGCGCCTCCCTCACTTGCCGGGGACGAAGT
TGGTGGCGTAGGCCCAAGCGTTGTTGTTGACGGGGTCGGCAATGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTCCCGGTGACGATGGCCTGGACGAAGAA
TCCGAACATGGAGAACATGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTAG
CCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCAAGGATGCTCTGCGCGTGGATGAGGCTCGGGTTCCCGAGGTAGTCCAGCCCGCCCT
CGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGAAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAG
CATGGCCCAGCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCCGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCCGGG
AACTCGCCCGTCAGGTAGCTCGGCGGCTCGCCGGACAGTGGGCCCAGGTACAGCACGCGGTCGGGGCCGTACCACGGGCTCCCGGACGCCGCCGCTGGCT