Detailed information on CNT3050857


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515285Cucumis sativusJuglans regia22.889.259070forward
CNT30158948Cucumis sativusPistacia vera24.1820.8587.8474reverse complement
CNT30541131Cucumis sativusBrassica napus25.162590.9177forward
CNT30236855Cucumis sativusBrassica oleracea25.1624.9290.9177forward
CNT3076575Cucumis sativusBrassica juncea25.1624.5290.9177forward
CNT30263689Cucumis sativusBrassica rapa25.1625.0890.9177forward
CNT30130300Cucumis sativusLolium perenne21.2422.4990.7765reverse complement
CNT30596965Cucumis sativusOryza meridionalis21.2418.1189.2365forward
CNT3026785Cucumis sativusPopulus trichocarpa22.8823.191.4370forward
CNT30120361Cucumis sativusCitrus clementina26.4726.7387.6581reverse complement

Expression of CNT3050857

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRALEWLKAGQALTGRVSWRITLNRPFQVRRWALGSWRRP*

Sequence

>CNT3050857
GCCGAGCTCGGTAATGTGAGCTTGTAACTCAAATGAGGGCTTTAGAGTGGTTGAAAGCGGGCCAAGCCCTAACGGGTAGGGTTTCTTGGAGAATTACACT
GAACCGCCCATTCCAAGTACGAAGATGGGCCTTGGGCTCTTGGCGAAGGCCTTGAGTCCTTTGCCCTTAGAGATGGAGGATACAGCGTGAGGCTGGTTTC
ACAGAGCAGCGTTACCTCCCGCTTCTGTCGGTGGAAGGATTACGGGCCGGCTCTCTTAGGGCCCGAACATACCTGGTGGGTACACCTCAGTCTAACAACC
ACTTTT