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Detailed information on CNT30451908


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694852Saccharum spontaneumOryza sativa20.2138.6286.32212forward
CNT30520218Saccharum spontaneumSetaria italica43.1850.2292.05453forward
CNT30143000Saccharum spontaneumLolium perenne23.5525.5286.64247forward
CNT30102775Saccharum spontaneumOryza rufipogon22.426.3788.51235forward
CNT30576925Saccharum spontaneumOryza barthii26.2230.7386.55275forward
CNT30496079Saccharum spontaneumDigitaria exilis52.4362.0188.73550forward

Expression of CNT30451908

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSFISDFFCFLTEPTGSKPGGRQEPFHWCKRPSHCHNHHRGQGSSWVGWSMAWECRR*

>peptide 2 (48 aa)
MMGGKGRLWHMMGGKGRLWRMMHGKGRSWRMRYGKGRSWRMTRGRETG*

>peptide 3 (65 aa)
MRLVAGPLLPPLVALDAAFFFSVLAFSSSSSCFRRSSSGNSASSLRSSTHLMTARSADCSFLFALL

>peptide 4 (35 aa)
MLPFSSRSWLSPVLQVASEDPPVETQLLVYGPQHT*

>peptide 5 (38 aa)
MRLELNTTHLVVVVRTHKMRYPTYRCSQSLQNRAIARF*

Sequence

>CNT30451908
AAAAATACTTTTAATTAAGTTCATGGTACATCAGGTACTTAAGGATTACATGCTGATTTTTTTTTTAGTTTTTCAAAGTTCTGAATAGAATTACATAAGG
ATGCGACGACAGTCTCGCTGATACCATACATAATTTACATCCAGGTTCCTTAGTAGTAAAAAAAGGTAGTGGTCTTAACATGAGACTTGAGCTAAACACA
ACACATCTAGTAGTAGTGGTAAGGACACATAAGATGAGATACCCAACCTACCGTTGTAGTCAGTCACTACAAAATAGGGCCATTGCGCGATTCTGAGTCG
TTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGACTTTTTTTGTTTCCTGACTGAACCTACCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCC
ATTGGTGTAAGCGGCCATCCCATTGCCATAACCACCATAGGGGGCAGGGTAGCTCATGGGTGGGGTGGAGTATGGCATGGGAATGCCGACGTTGACACTG
GCTACCTCCTCAGCTGGGTAAACATATGGCTCCCTGATCACCGGCGGGCTCCGGTTGCAGTAGAGGCCATGTCCAACCGGCCTGTCATAAGGGTAAGGAG
AGGGTGTGGCGTATGATGGGTGGGAAGGGGAGGCTGTGGCATATGATGGGTGGGAAGGGGAGGCTGTGGCGTATGATGCATGGGAAGGGGAGGTCGTGGC
GTATGCGGTATGGGAAGGGGAGGTCGTGGCGTATGACGCGTGGGAGGGAGACTGGGTAAATGTGGTGGGAGCTGGGAAAGAAGACACGCAAGCATTGTTA
GTGAGACGACCTGCCTTGGCAGGAGGCATTGGGCCTCCATTGCTCGCACGGATGCGCTTGGTTGCAGGGCCGCTGCTGCCGCCACTGGTAGCGCTTGATG
CTGCCTTTTTCTTCTCGGTCTTGGCTTTCTCCAGTTCTTCAAGTTGCTTCCGAAGATCCTCCAGTGGAAACTCAGCTTCTAGTTTACGGTCCTCAACACA
CTTAATGACAGCTCGCAGTGCAGACTGCTCTTTCTTGTTCGCATTGCTC