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Detailed information on CNT30580766


BLAST search results

BLAST vs Swiss-Prot:
sp|Q940H8|FRL4B_ARATH, E-value = 2e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30143000Echinochloa crusgalliLolium perenne72.1975.179.64727forward
CNT30496079Echinochloa crusgalliDigitaria exilis85.597.0790.13861forward

Expression of CNT30580766

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MHLVVGVVVRTYELRYPIYRCSQSLQNRAITRLQSLASSVVVMSFISDIFS*

>peptide 2 (50 aa)
MGKGRQWRMMHGKGRQWRMRCGKGKWWHMRCGKESEQMWWELGKKTRTCC*

>peptide 3 (36 aa)
MLPFSSRSWPSPVLRAASGDPPVETQLPAYGPQHTL*

>peptide 4 (44 aa)
MLIFLVFFPQFQIELHKATMRVSADTIHNLHPGSLVVVKSSGLG*

Sequence

>CNT30580766
CCCCAGACCATAATGATCACACAGCAAGGTAAACTAAAAACATTAAGTCCATGGTACATCCAGTTTTAATAAGGATTACATGCTGATTTTTTTGGTTTTT
TTCCCACAGTTCCAAATAGAATTACATAAGGCGACGATGAGAGTCTCCGCTGATACCATACATAATTTACATCCAGGTTCCTTAGTAGTAGTAAAAAGTA
GTGGTCTAGGATGAGACGAGTGCTAACACAACAAAATGCATCTAGTAGTAGGGGTGGTGGTAAGAACATATGAGCTGAGATACCCAATCTACCGTTGTAG
TCAGTCACTACAAAATAGGGCCATTACGCGATTGCAGTCGTTGGCATCATCAGTTGTTGTCATGTCATTCATCAGCGACATTTTTTCCTGACTGAACCTA
CCGGTAGTAAGCCTGGTGGAAGGCAGGAGCCATTCCACTGTTGTAAGCTGCCATACCGTTGCCATACCCACCATAGGGGGCAGGGTAGCTCATGGGTGGG
GTGGAGTATGGCAACGCAATGCCGACATTTACGCTGGCTACTTCTTCAGCAGGGTAAACATATGGCTCTCTGAAGGCCGGTGGGCTCCGGTTGCAGTATA
CATGACCAACCGGCCTGTCATATGGGTAAGGGGAGGCAGTGGCGTATGATGCATGGGAAGGGGAGGCAGTGGCGTATGAGGTGTGGGAAGGGGAAGTGGT
GGCATATGAGGTGTGGGAAGGAGAGCGAGCAAATGTGGTGGGAGCTGGGAAAGAAGACACGGACGTGTTGTTAGTTCGACCTGCCTTGGCAAGAGGCATT
GGGCCTCCATTGCTTGCACGGATACGCTTGGTTGCAGGGCCACTGCTGCCGCCACTAGAAGCACTTGATGCTGCCTTTTTCTTCTCGGTCTTGGCCTTCT
CCAGTTCTTCGAGCTGCTTCCGGAGATCCTCCAGTGGAAACTCAGCTTCCAGCTTACGGTCCTCAACACACTTTATAACAGCTCTCAGCGCAGACTGCTC
TTTCTTG