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Detailed information on CNT30481607


BLAST search results

BLAST vs Swiss-Prot:
sp|P19866|G3PA_SPIOL, E-value = 4e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515727Chara brauniiJuglans regia12.2726.3385.1474forward
CNT30703529Chara brauniiQuercus lobata13.9320.3984.5284forward
CNT30490066Chara brauniiOlea europaea40.6327.4781.63245forward
CNT30123402Chara brauniiPhyscomitrium patens20.7315.5584.8125forward
CNT30288286Chara brauniiTriticum aestivum33.1735.1581.5200forward
CNT30221551Chara brauniiHordeum vulgare20.7313.9280.8125forward
CNT30385588Chara brauniiTriticum turgidum39.1484.2981.78236forward
CNT30658162Chara brauniiTriticum dicoccoides37.4840.5781.86226forward
CNT30680437Chara brauniiTriticum urartu36.3242.0380.82219forward
CNT30346859Chara brauniiEragrostis tef20.7328.2881.6125forward
CNT30361627Chara brauniiSorghum bicolor32.1727.8779.38194forward
CNT30356846Chara brauniiLactuca sativa23.2227.2481.43140forward
CNT30498309Chara brauniiDigitaria exilis36.8237.8881.53222forward
CNT30594547Chara brauniiEragrostis curvula20.7325.3580.8125forward
CNT30558465Chara brauniiPanicum hallii10.613290.6264forward

Expression of CNT30481607

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MMLNLLSRTLTKGARQLVVHEALLMMVSEGS*

>peptide 2 (46 aa)
MRAFSSTSQRQCEPANVFFSVCTTRSTTETLGVGTRRAIPLSFPLS*

>peptide 3 (38 aa)
MCMSVCGYVLESHLVILVSNTKVTDVCLQMGVLSAEGL*

Sequence

>CNT30481607
ATGTGTATGTCTGTGTGTGGTTATGTCCTGGAATCGCACTTAGTAATACTAGTAAGTAATACCAAGGTTACTGATGTCTGTCTGCAAATGGGAGTGCTGA
GTGCGGAAGGGCTATGAGGGCGTTTAGCTCCACTTCTCAGCGACAATGTGAGCCAGCAAATGTCTTCTTCTCGGTCTGCACGACCAGGTCGACGACAGAG
ACGTTGGGAGTTGGCACTCGGAGAGCAATACCATTGAGCTTCCCCTTGAGCTGAGGAAGTACCAAAGCAACGGCCTTGGCAGCACCAGTGGAGGTAGGGA
CGATGTTGAGAGCAGCAGCACGAGCACGTCGGAGATCCCGGTGAGACGCGTCCAGAAGCCTTTGGTCACCGGTGTAGGAGTGGGTAGTCGTCATTGTGCC
CTTGATGATGCTGAACTTGCTGTCCAGAACTTTGACAAAGGGGGCCAGGCAGTTGGTAGTGCACGAGGCATTGCTGATGATGGTCTCCGAGGGGTCGTAG
TCTGCATCGTTAACACCCACCACATATGTGGGGATATCACCCTTACCCGGAGCAGTGATGAGCACCTTCTTGGCACCAGCTTTCAAGTGCTTGCCAGCAC
CCT