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Detailed information on CNT30123402


BLAST search results

BLAST vs Swiss-Prot:
sp|P19866|G3PA_SPIOL, E-value = 2e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676566Physcomitrium patensSetaria viridis17.0428.7883.21137forward
CNT30523786Physcomitrium patensSetaria italica17.0422.9983.21137forward
CNT30526307Physcomitrium patensPhaseolus vulgaris6.722488.8954forward
CNT30712586Physcomitrium patensGlycine max18.1621.6383.56146forward
CNT30385588Physcomitrium patensTriticum turgidum6.972094.6456forward
CNT30509382Physcomitrium patensSolanum lycopersicum15.9220.0382.03128forward
CNT30361992Physcomitrium patensSorghum bicolor9.722.3585.978forward
CNT30357505Physcomitrium patensLactuca sativa18.7822.8882.78151forward
CNT30481607Physcomitrium patensChara braunii15.5520.7384.8125forward
CNT30572796Physcomitrium patensVitis vinifera16.1724.6282.31130forward
CNT30585204Physcomitrium patensEchinochloa crusgalli15.9225.383.59128forward
CNT30558465Physcomitrium patensPanicum hallii6.972892.8656forward
CNT30726417Physcomitrium patensLupinus angustifolius11.0720.6583.1589forward
CNT3065586Physcomitrium patensSelaginella moellendorffii6.2220.839050forward

Expression of CNT30123402

Peptides detected in this lncRNA

>peptide 1 (31 aa)
DVYRNIPEHKDADALGSTNEYKLITISLEEY*

>peptide 2 (94 aa)
MTTNPTKKPLGRVLSATPRIRLKKKPSQHATTSSFRRSGLILDLAKTVDLHLQNALSRQSTPISPQPGWPGRRPSVSIPTRCRTMPQPSPYRLP*

>peptide 3 (94 aa)
MTIVNDESTVDDTSVHLKSTDTNGSSHTANTPFNCSVWHASLKAWFTSSAKVFFSTWTTKSTTDTLGVGTMFRAAARALLKSRWEASSSLWSPV*

>peptide 4 (35 aa)
MVPLMIPNFSSNTLTKGARQLVVHEALLMIASECL*

Sequence

>CNT30123402
GATGTATACAGAAATATTCCGGAGCACAAAGACGCGGATGCATTAGGCTCGACGAATGAATACAAGCTGATTACTATCAGCCTCGAGGAGTACTAAGAAT
GACGACCAACCCGACAAAGAAGCCCCTAGGTCGGGTCTTATCGGCAACTCCTCGCATTAGATTGAAAAAAAAACCTAGCCAACATGCAACAACATCCAGC
TTCAGACGCAGCGGGCTGATACTAGACCTTGCAAAAACTGTTGACCTTCACCTGCAGAACGCTCTAAGTAGGCAATCTACTCCCATTTCTCCGCAACCAG
GTTGGCCAGGTCGACGACCCTCTGTGAGTATCCCCACTCGTTGTCGTACCATGCCACAACCTTCACCATATCGTCTCCCATGACCATCGTCAACGATGAG
TCCACCGTAGATGACACATCAGTGCACCTGAAGTCCACTGACACCAATGGCTCGTCGCACACGGCCAACACTCCCTTCAACTGCTCAGTTTGGCATGCAT
CTCTAAAGGCCTGGTTTACCTCCTCGGCAAAGGTCTTCTTCTCAACTTGGACGACCAAGTCTACAACTGACACATTAGGGGTGGGCACAATGTTCAGGGC
TGCGGCACGCGCTCTCCTCAAGTCACGGTGGGAGGCATCGAGCAGCCTCTGGTCACCAGTGTAGGAGTGGGTAGTGGTCATGGTTCCCTTGATGATTCCG
AACTTCTCGTCCAACACCTTGACGAAGGGAGCAAGGCAGTTGGTTGTGCACGAGGCGTTGCTAATGATAGCGTCCGAGTGCTTATAGTCCTGCTCGTTCA
CACC