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Detailed information on CNT30498309

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676563	Digitaria exilis	Setaria viridis	19.8	29.44	89.66	116	forward
CNT30524158	Digitaria exilis	Setaria italica	20.82	16.18	89.34	122	forward
CNT30628639	Digitaria exilis	Vigna unguiculata	23.72	19.55	82.01	139	forward
CNT30711851	Digitaria exilis	Glycine max	30.03	15.26	79.55	176	forward
CNT30289015	Digitaria exilis	Triticum aestivum	40.96	49.18	91.67	240	forward
CNT30221551	Digitaria exilis	Hordeum vulgare	36.18	23.61	90.57	212	forward
CNT30385999	Digitaria exilis	Triticum turgidum	43.34	47.83	90.94	254	forward
CNT30658162	Digitaria exilis	Triticum dicoccoides	43.34	45.6	90.94	254	forward
CNT30465116	Digitaria exilis	Saccharum spontaneum	43.17	45.1	91.7	253	forward
CNT304088	Digitaria exilis	Zea mays	41.81	35.46	91.02	245	forward
CNT30680437	Digitaria exilis	Triticum urartu	36.18	40.69	92.92	212	forward
CNT30346859	Digitaria exilis	Eragrostis tef	37.71	50	90.5	221	forward
CNT30365811	Digitaria exilis	Sorghum bicolor	41.81	38.16	91.02	245	forward
CNT30481607	Digitaria exilis	Chara braunii	37.88	36.82	81.53	222	forward
CNT30594547	Digitaria exilis	Eragrostis curvula	27.65	32.86	93.83	162	forward
CNT30558465	Digitaria exilis	Panicum hallii	18.77	55	90.91	110	forward

Expression of CNT30498309

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MSYNNGVLHFQLLATMSARSTTDTFGVGTRSAIPLSFPLRFGSTSATALAAPVEVGTMLSAAARARRRSRWLASSSLWSPV*

>peptide 2 (30 aa)
MECFTSSCWRQCQLGRRRTRSGWAPGARSR*

Sequence

>CNT30498309
AAGTATTGTGAACACCTCAAAGAAAACTGGTTCTGAAATTGCCATCTTTGAACTAAGAGTTTGAAATCTACAAGAGAGCCTTGCAGCCGATGGTATATAT
TACAAATCCACATTATACAGCGTTTGGATTTCCTTTCGCCGGAAGTCGATTATAATCCGTCCCTCGACAACGAAAAATCAGAGAAGGTAGAAGGGAGAGG
TCGAGAAAAGAGAAGAGAAGAATCGTTGGGCCTCGATTTCTCATTACAAATTATACGATATATATCAGGGAAGAGCCTGGGGAAAATTTCGAAAAGCCGA
GGCCCGGAGGATGAGTTACAATAATGGAGTGCTTCACTTCCAGTTGTTGGCGACAATGTCAGCTAGGTCGACGACGGACACGTTCGGGGTGGGCACCCGG
AGCGCGATCCCGTTGAGCTTCCCCTTGAGGTTCGGGAGCACCAGCGCCACGGCCTTGGCTGCCCCCGTCGAGGTGGGCACGATGTTGAGCGCCGCGGCGC
GGGCCCGGCGGAGGTCGCGGTGGCTGGCGTCCAGCAGCCTCTGGTCACCGGTGTAGGAGTGGGTGGTCGTCATGGTGCCCTTGATG