Detailed information on CNT30356846


BLAST search results

BLAST vs Swiss-Prot:
sp|P19866|G3PA_SPIOL, E-value = 1e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676506Lactuca sativaSetaria viridis18.4823.9983.1695forward
CNT30490066Lactuca sativaOlea europaea26.0715.0283.58134forward
CNT30712586Lactuca sativaGlycine max82.8863.1180.52426forward
CNT30288286Lactuca sativaTriticum aestivum24.5122.1482.54126forward
CNT30385999Lactuca sativaTriticum turgidum28.2127.3183.45145forward
CNT30658162Lactuca sativaTriticum dicoccoides29.1826.9383.33150forward
CNT30481607Lactuca sativaChara braunii27.2423.2281.43140forward
CNT30119544Lactuca sativaCitrus clementina21.989.8386.73113forward
CNT30558465Lactuca sativaPanicum hallii15.7640.587.6581forward

Expression of CNT30356846

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVTIKRLNERIERLTPSYLQQCQPNPPPFASNPIRYRTMQSPSPCHLP*

>peptide 2 (38 aa)
MLGRCSVLQLLHVGGHGGWRRAAFGLRCRSELWSLFPL*

>peptide 3 (59 aa)
MSSPITMVNDESTVDDTSLHLKSTDTRGSSHTARIPANSLSAASLNAALTSSAKVFLET*

>peptide 4 (51 aa)
MKGSRGSLPVICNNVSQIHHPLRVTPFVIVPCNHLHHVISHNHGQRRVNSR*

Sequence

>CNT30356846
CAAAAATGTAGATAACTTGAAAAGAAATGGTAACAATTAAACGATTGAATGAAAGGATCGAGAGGCTCACTCCCAGTTATTTGCAACAATGTCAGCCAAA
TCCACCACCCTTTGCGAGTAACCCCATTCGTTATCGTACCATGCAATCACCTTCACCATGTCATCTCCCATAACCATGGTCAACGACGAGTCAACAGTCG
ATGACACGTCGCTGCATCTAAAGTCAACAGACACCAGAGGCTCGTCGCACACCGCCAGAATACCAGCCAACTCATTGTCAGCAGCCTCCCTGAACGCCGC
GTTGACCTCCTCAGCGAAGGTCTTCTTGGAAACCTGAACCACCAAGTCCACGACGGAGACATTGGCGCGACGGCCTTTGCTGCTCCGGTGGATGTTGGGA
CGATGTTCAGTGCTGCAGCTCTTGCACGTCGGAGGTCACGGTGGCTGGCGTCGAGCAGCCTTTGGTCTCCGGTGTAGGAGTGAGTTGTGGTCATTGTTCC
CTTTATGATTCCTG