Detailed information on CNT30361627


BLAST search results

BLAST vs Swiss-Prot:
sp|P09672|G3PA_SINAL, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703529Sorghum bicolorQuercus lobata16.5227.9181.74115forward
CNT30526307Sorghum bicolorPhaseolus vulgaris14.0843.5683.6798forward
CNT30445641Sorghum bicolorSaccharum spontaneum22.8454.6497.48159forward
CNT30481607Sorghum bicolorChara braunii27.8732.1779.38194forward

Expression of CNT30361627

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MPFSFPFSWGSTSATALAAPVLVGTMFSAAARALRRSRWDASSSLWSPVYECVVVMVGMSAPLAGAVMMTFFAPAWMCLPAPGPSTKTPVPFT

>peptide 2 (62 aa)
MIDEINTHRRITGVPTGNDRKAEACTSSVITYTTHRKRHIFVYVSFGESVYSILYRKNTRQS*

>peptide 3 (91 aa)
MLRTPCTRRSRGPPRTRSGLAHGARCRSASPSAGAAPAPRPWRRPCSSARCSAPPHGPSGGHGGTRPAASGHPCTSALSSWSGCRRPWPEQ*

Sequence

>CNT30361627
AAGCAAAGCGATTATACCAGACCAGATTATGCTGGTGACACGAAATCTTTACATGTACTTATATTAGTATAAAAGTATATGATGGATCGATCATGTCGGC
ATGATTGATGAAATAAACACACACCGCAGAATTACAGGAGTCCCAACAGGAAATGATCGAAAAGCGGAAGCCTGTACGAGTTCAGTGATTACATACACAA
CTCATAGAAAACGGCACATTTTCGTCTACGTCTCTTTCGGCGAATCTGTATATAGTATTCTCTATCGAAAGAACACGAGGCAAAGCTAGTGAATTTTCTG
AGCACACGGCGGCCCCTGGCCTACAACAAGGGGGCCTCATCATGCTTCGTACACCTTGCACTCGTCGGTCTCGGGGTCCACCACGGACACGTTCGGGGTT
GGCACACGGAGCGCGATGCCGTTCAGCTTCCCCTTCAGCTGGGGCAGCACCAGCGCCACGGCCTTGGCGGCGCCCGTGCTCGTCGGCACGATGTTCAGCG
CCGCCGCACGGGCCCTCCGGAGGTCACGGTGGGACGCGTCCAGCAGCCTCTGGTCACCCGTGTACGAGTGCGTTGTCGTCATGGTCGGGATGTCGGCGCC
CTTGGCCGGAGCAGTGATGATGACCTTCTTTGCGCCGGCCTGGATGTGCTTGCCGGCGCCGGGGCCGTCGACGAAGACTCCGGTGCCCTTCACGAC