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Detailed information on CNT30594547


BLAST search results

BLAST vs Swiss-Prot:
sp|P09672|G3PA_SINAL, E-value = 3e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676563Eragrostis curvulaSetaria viridis61.4676.979.54303forward
CNT30524158Eragrostis curvulaSetaria italica61.0539.9280.07301forward
CNT30288286Eragrostis curvulaTriticum aestivum34.6930.0594.74171forward
CNT30221551Eragrostis curvulaHordeum vulgare33.0618.1594.48163forward
CNT30385999Eragrostis curvulaTriticum turgidum34.6932.294.74171forward
CNT30658162Eragrostis curvulaTriticum dicoccoides34.6930.794.74171forward
CNT30465116Eragrostis curvulaSaccharum spontaneum32.8628.8894.44162forward
CNT304088Eragrostis curvulaZea mays34.4824.695.29170forward
CNT30680437Eragrostis curvulaTriticum urartu26.9825.5396.99133forward
CNT30346859Eragrostis curvulaEragrostis tef80.9390.2793.98399forward
CNT30365811Eragrostis curvulaSorghum bicolor32.8625.2393.83162forward
CNT30481607Eragrostis curvulaChara braunii25.3520.7380.8125forward
CNT30498309Eragrostis curvulaDigitaria exilis32.8627.6593.83162forward
CNT30558465Eragrostis curvulaPanicum hallii20.695197.06102forward

Expression of CNT30594547

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSARSTTETFGVGTRSAIPLSLPLRLGSTSATALAAPVDVGTMLSAAAR

>peptide 2 (41 aa)
MEETKKKPLGVGWRPRFLITDYHQGRKEPVENFEVEDDVCY*

>peptide 3 (36 aa)
MMCVTRAQSFTSSCWRRCQRGRRRRRSGWAPGARSR*

>peptide 4 (31 aa)
IILIKEILGPDFDHFVVSEQRVESTREPGDR*

Sequence

>CNT30594547
TATAATTCTGATAAAAGAAATACTTGGACCTGATTTTGATCATTTTGTCGTCTCTGAACAGAGAGTTGAATCTACAAGAGAACCTGGCGATCGATAGTGT
ATAGTACAAATCCACATTATACAGCGTTGCGATTTGCTTCGCCGGAAGTCGATTACAGTCCGTCCCTCGACAACAAAGAATCAGAGATGGAAGAAACGAA
AAAGAAACCGTTGGGAGTTGGTTGGAGACCTCGATTTCTCATTACAGATTATCATCAGGGGAGGAAGGAGCCTGTGGAAAATTTTGAAGTCGAGGATGAT
GTGTGTTACTAGAGCGCAAAGCTTCACTTCCAGTTGTTGGCGACGATGTCAGCGAGGTCGACGACGGAGACGTTCGGGGTGGGCACCCGGAGCGCGATCC
CGTTGAGCTTGCCCTTGAGGTTGGGGAGCACCAGCGCCACGGCCTTGGCCGCGCCGGTGGACGTGGGCACGATGTTGAGCGCGGCCGCACGGG