Detailed information on CNT30458221


BLAST search results

BLAST vs Swiss-Prot:
sp|P29250|LOX2_ORYSJ, E-value = 3e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692296Saccharum spontaneumOryza sativa29.5311.2582.9588forward
CNT30224823Saccharum spontaneumHordeum vulgare31.5417.6484.0494forward
CNT30394048Saccharum spontaneumTriticum turgidum53.0220.2386.71158forward
CNT30247013Saccharum spontaneumAvena sativa50.6720.381.46151forward
CNT30666056Saccharum spontaneumTriticum dicoccoides39.9312.5384.87119forward
CNT30135896Saccharum spontaneumLolium perenne33.2221.5788.8999forward
CNT30344056Saccharum spontaneumEragrostis tef27.858.9390.3683forward
CNT30361620Saccharum spontaneumSorghum bicolor20.8112.4588.7162forward
CNT30594693Saccharum spontaneumEragrostis curvula60.444.3386.11180forward

Expression of CNT30458221

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MASTRFSISISRAPNRLNASCALASDVHSLVSRWPRYTSSEEWLDRISSSEMPTTAWNCVVMERTKNFSGFFSSSLYASEPGTGMGRRLT

>peptide 2 (98 aa)
AVLVAWVLVHGLHAFLDLDQPRPESLERLLRLGVRRPLLGVALAEVHLIGGVAGQDLQQRDAHDGLELRGDGAHEELLRVLLQLLVRVGARHRHGPPAH

Sequence

>CNT30458221
GCGGTCCTTGTAGCGTGGGTCCTTGTTCATGGCCTCCACGCGTTTCTCGATCTCGATCAGCCGCGCCCCGAATCGCTTGAACGCCTCCTGCGCCTTGGCG
TCCGACGTCCACTCCTTGGTGTCGCGCTGGCCGAGGTACACCTCATCGGAGGAGTGGCTGGACAGGATCTCCAGCAGCGAGATGCCCACGACGGCCTGGA
ACTGCGTGGTGATGGAGCGCACGAAGAACTTCTCCGGGTTCTTCTCCAGCTCCTTGTACGCGTCGGAGCCCGGCACCGGCATGGGCCGCCGGCTCACG