CANTATAdb - search

Detailed information on CNT30344056

BLAST search results

BLAST vs Swiss-Prot:
sp|P29114|LOX1_HORVU, E-value = 7e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692296	Eragrostis tef	Oryza sativa	38.86	46.16	82.83	361	forward
CNT30678051	Eragrostis tef	Setaria viridis	21.85	80.88	81.77	203	forward
CNT30224482	Eragrostis tef	Hordeum vulgare	16.58	71.63	87.66	154	forward
CNT30393652	Eragrostis tef	Triticum turgidum	42.41	46.63	82.23	394	forward
CNT30591741	Eragrostis tef	Musa acuminata	30.89	57.75	80.84	287	forward
CNT30246978	Eragrostis tef	Avena sativa	22.6	46.88	87.62	210	forward
CNT30666056	Eragrostis tef	Triticum dicoccoides	79.98	78.21	81.02	743	forward
CNT30458221	Eragrostis tef	Saccharum spontaneum	8.93	27.85	90.36	83	forward
CNT30683236	Eragrostis tef	Triticum urartu	11.09	25.31	93.2	103	forward
CNT30361620	Eragrostis tef	Sorghum bicolor	32.72	61.04	89.47	304	forward
CNT30100848	Eragrostis tef	Oryza rufipogon	24.54	60.32	87.28	228	forward
CNT30594693	Eragrostis tef	Eragrostis curvula	43.81	100.25	82.31	407	forward

Expression of CNT30344056

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRAPGPARAPRTPRSQAPACGAGSRWDGWEGSPRTGTARS*

>peptide 2 (37 aa)
ISFRGIQKHSLGNLYSHINRLIQTHTDLYSLHTPSAG*

>peptide 3 (50 aa)
MMVVQALASSETVCILGHHGASLRSPWPTSRTSFHHACSSASPCSTASLG*

>peptide 4 (89 aa)
MSTRRSLNRLNAASALASDVHSGVSRWPRYTSSEECWERISMSDMPMMVWIWLVMVWMNARSGSCSSSAYSSLPGSGMRRRLTVGRLGR*

Sequence

>CNT30344056
AGATTAGCTTTCGAGGGATACAGAAACACTCCCTTGGTAATCTTTATTCACATATAAACCGGCTCATACAAACACACACCGATCTCTACAGTCTACATAC
ACCGAGTGCCGGATGATACGCCGCTCGTATACACGACTTATTGACCTACCTGCTCTCACATGGAGATGCTGTTGGGGATGCCCTTGGCGGTGATCCCCGC
GGCGGCGCCTTTGTGGTCGGAGGTGTTGGGGTAGAGCAGCATGTAGGGGAACTTGGCTGGCCCGTTCCGGTTCTTGAGCTCCGGGTCGCGGTTCTCGCTC
ACCACCTTTCCCTCGATGTCCACGAGGCGGTCGCTGAACCGCTTGAACGCCGCGAGCGCCTTGGCGTCCGACGTCCACTCCGGCGTGTCGCGCTGGCCCA
GGTACACCTCGTCGGAGGAGTGCTGGGAGAGGATCTCGATGAGCGATATGCCGATGATGGTCTGGATCTGGCTCGTGATGGTGTGGATGAATGCGCGCTC
CGGGTCCTGCTCGAGCTCCGCGTACTCCTCGCTCCCAGGCTCCGGCATGCGGCGCCGGCTCACGGTGGGACGGTTGGGAAGGTAGCCCGCGTACGGGTAC
TGCCCGAAGTTGACGGCCGCGTGCAGTGCTGACGCGATCCAGATGATGGTGGTGCAGGCGTTGGCGAGCTCGGAGACGGTCTGCATCTTGGGCCACCACG
GCGCGTCCTTGAGGTCGCCGTGGCCGACCTCGCGCACCTCCTTCCACCACGCCTGCAGCTCCGCGTCGCCCTGCAGCACGGCGTCGCTCGGGTAGTAGAT
GGCCAGGTACTCGTTCACCCACTGCTCGATCGCGTGCCAGATCGCCAGCCCGTCCGTCGCGTACGGGTAGTCCTCGATCAGCAGCCGCACCTTGTACGGG
CTCGACGGGTCCTCAACCGCCACGCCCCT