CANTATAdb - search

Detailed information on CNT30247013

BLAST search results

BLAST vs Swiss-Prot:
sp|P29250|LOX2_ORYSJ, E-value = 1e-141

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692296	Avena sativa	Oryza sativa	37.1	35.29	80.8	276	forward
CNT30678051	Avena sativa	Setaria viridis	15.99	47.41	81.51	119	forward
CNT30591783	Avena sativa	Musa acuminata	17.34	40.31	83.72	129	forward
CNT30458221	Avena sativa	Saccharum spontaneum	20.3	50.67	81.46	151	forward

Expression of CNT30247013

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPVAPHHPEAHRQWGSRLLHTLAPTARWHARWLARPPHKDSPPAVV*

>peptide 2 (45 aa)
MPMRAWNWLVMVRMNTFSGSRPSKAYSSVFGSGIGRRLADGLLGW*

>peptide 3 (31 aa)
AVSPVASPLWSEVFGYSSMYGNFAGPLRFLS*

>peptide 4 (43 aa)
MMVVHALTSSATFSILGHHFASLRSPCPTSRTSFHHACSSTSP*

>peptide 5 (36 aa)
MPRAPWHLRSTLVYHADRGKPRQRSAWTRSPAKICR*

Sequence

>CNT30247013
TAGCTGTGAGCCCAGTGGCATCACCCTTGTGGTCAGAGGTGTTTGGGTATAGCAGCATGTACGGGAACTTCGCCGGCCCATTGCGGTTCTTGAGTTGAGG
GTTTCCATTCAAGGCCACCACTTGGCTCTCGATGCCTTCCAATGTTGCCCCGAACCGCTTGAATGCCTCGAGCGCCTTGGCATCTGAGGTCCACTCTGGT
GTATCACGCTGACCGAGGTAAACCTCGTCAGAGGAGTGCTTGGACAAGATCTCCAGCAAAGATATGCCGATGAGGGCCTGGAACTGGTTGGTGATGGTGC
GGATGAACACCTTTTCTGGGTCGCGGCCTAGCAAGGCATACTCCTCGGTGTTTGGCTCTGGCATCGGACGACGGCTTGCCGATGGCTTGTTAGGGTGGTA
ACCAGCATATGGGTACTGCCCAAAGTTCACAGCCGCATGTAGCGCAGATCCTGTCCAGATGATGGTGGTGCATGCCTTGACCAGCTCCGCCACGTTCTCC
ATCTTGGGCCACCACTTCGCGTCCTTGAGGTCTCCATGCCCGACCTCGCGAACCTCTTTCCACCATGCCTGTAGCTCCACATCACCCTGAAGCACACCGT
CAGTGGGGTAGTAGATTGCTACATACTCTTGCACCCACTGCTCGATGGCATGCCAGATGGCTAGCCCGTCCACCGCATAAGGATAGTCCTCCAGCAGTAG
TTTGACCTTGTTTGGGTTTGATGGGTCCCGCACCGCCATGCCCC