Detailed information on CNT30692296


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76I22|LOX1_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678051Oryza sativaSetaria viridis10.3632.2785.1981forward
CNT30224984Oryza sativaHordeum vulgare12.2836.2387.596forward
CNT30591741Oryza sativaMusa acuminata16.2425.5581.89127forward
CNT30247013Oryza sativaAvena sativa35.2937.180.8276forward
CNT30666056Oryza sativaTriticum dicoccoides30.9525.4780.17242forward
CNT30458221Oryza sativaSaccharum spontaneum11.2529.5382.9588forward
CNT30344056Oryza sativaEragrostis tef46.1638.8682.83361forward
CNT30594688Oryza sativaEragrostis curvula28.0173.7480.82219forward

Expression of CNT30692296

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIVVQALVSSGKLCILGHQSASLRSPCPTSRTSFHHACSSTSPWRTPSFG*

>peptide 2 (54 aa)
MPDFPHLLPPCLQLHISLEDTIVWVVDGTVLSDPLLDCLPDRQAICCIRVVLDQ*

>peptide 3 (29 aa)
HIEMLLGMPLAVIPSAAPLLSDVLGNISV*

>peptide 4 (31 aa)
MLPVPWGLMSTLACHAAQDRSHPLSALIESQ*

>peptide 5 (36 aa)
MFNTLLSISTSCLLNLLNASSALGSDVHSGVSRCPR*

>peptide 6 (48 aa)
MSETPRMVWNWLVMVRMKNFSGFSSSSVYSLEPGSGIGRRLMVGRFGR*

Sequence

>CNT30692296
TCATATTGAGATGCTATTGGGGATGCCCCTGGCAGTGATCCCCTCAGCCGCCCCCTTATTGTCTGACGTGTTGGGGAACATCAGTGTGTAGGGGAAATTG
GCTGGACCGACCCGGTTCTTGAGCAGGGGGTCCTTGTTCATGTTCAACACTTTGCTCTCAATCTCCACCAGCTGCCTGCTGAACCTCTTGAATGCTTCCA
GTGCCTTGGGGTCTGATGTCCACTCTGGCGTGTCACGCTGCCCAAGATAGATCTCATCCGCTGAGTGCTTTGATAGAATCTCAATGAGCGAGACACCGAG
AATGGTTTGGAATTGGCTGGTGATGGTGCGGATGAAGAACTTCTCTGGGTTCTCGTCCAGCTCTGTGTACTCCTTGGAACCCGGCTCGGGCATCGGCCGC
CGGCTTATGGTCGGACGGTTTGGAAGATAGCCCGCGTATGGGTACTGCCCGAAATTGACGGCTGCGTGGAGTGCTGATGCAATCCAGATGATTGTGGTGC
AGGCCTTGGTGAGCTCAGGCAAGCTCTGCATCTTGGGCCACCAGTCCGCGTCCTTGAGATCACCATGCCCGACTTCCCGCACCTCCTTCCACCATGCTTG
CAGCTCCACATCTCCCTGGAGGACACCATCGTTTGGGTAGTAGATGGCACAGTACTCAGTGACCCACTGCTCGATTGCTTGCCAGATCGCCAGGCCATCT
GTTGCATAAGGGTAGTCCTTGATCAGTAGCTTCACCTTGGATGGGCTTGATGGGTCCTTGATGGCAATGCCTCTGCATTACA