CANTATAdb - search

Detailed information on CNT30224823

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30458221	Hordeum vulgare	Saccharum spontaneum	17.64	31.54	84.04	94	forward

Expression of CNT30224823

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MRSRRRTCSDQMDMLFGMPLAVSPSACPVWSEECLERISMSEMPTRAWNWLVMVRMKAFSGSRSS

>peptide 2 (62 aa)
LELDPETEETEELATPKLKITTMPEVCQEEEKQRRAGGNITPSTSLLGKTRDFFCTRRCIDR*

Sequence

>CNT30224823
AACTTGAGCTTGACCCAGAAACAGAGGAAACAGAGGAGCTTGCAACGCCCAAACTGAAGATCACAACAATGCCTGAGGTTTGCCAAGAAGAAGAAAAACA
ACGGAGGGCCGGAGGGAACATCACACCATCGACTTCATTATTGGGCAAAACAAGGGATTTTTTCTGCACACGACGATGCATTGACCGGTAGCCAGCTGAG
CTGAGCTTCCGCATGCCGATCAGACCCGTCGTGCACGCACCCTTATTGCCTTAATTATTCATGCACCGGCACAACTCTCTGTCACACACACACACACAAG
CTAGCTCCGGTGTAAGCAAGCAAGGATAGCACAAAAGCATGAGGTCTCGACGACGGACGTGCTCAGATCAGATGGATATGCTGTTCGGGATGCCCCTGGC
GGTGAGCCCCTCGGCCTGTCCCGTGTGGTCGGAGGAGTGCTTGGAGAGGATCTCCATGAGCGAGATGCCCACCAGGGCATGGAACTGGCTGGTGATGGTG
CGGATGAAGGCCTTCTCCGGGTCTCGCTCCAGC