Detailed information on CNT30361620


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53RB0|LOX4_ORYSJ, E-value = 8e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677963Sorghum bicolorSetaria viridis19.6844.9589.898forward
CNT30522025Sorghum bicolorSetaria italica11.0421.2496.3655forward
CNT3020541Sorghum bicolorCitrullus lanatus14.8630.0889.1974forward
CNT30592110Sorghum bicolorMusa acuminata28.9215.9683.33144forward
CNT30246978Sorghum bicolorAvena sativa42.7747.5488.26213forward
CNT30458221Sorghum bicolorSaccharum spontaneum12.4520.8188.7162forward
CNT30135896Sorghum bicolorLolium perenne22.0923.9781.82110forward
CNT30344056Sorghum bicolorEragrostis tef61.0432.7289.47304forward
CNT30594693Sorghum bicolorEragrostis curvula53.6165.7680.9267forward

Expression of CNT30361620

Peptides detected in this lncRNA

>peptide 1 (49 aa)
RVGVQQHVRHFHRPLSVLQGRVVVHRLDPVLNLHQPASESFERIQRLGV*

>peptide 2 (95 aa)
VLGYSSMYGISTGPFRFFKVGLSFIVLIRFSISTSRLPNLLNASNALASDVHRSGSSRWPRYTSSEECLERISMSEMPMMVWIWLVMVWMKPRSG*

Sequence

>CNT30361620
ACGTGTTGGGGTACAGCAGCATGTACGGCATTTCCACCGGCCCCTTTCGGTTCTTCAAGGTCGGGTTGTCGTTCATCGTCTTGATCCGGTTCTCAATCTC
CACCAGCCGGCTTCCGAATCTTTTGAACGCATCCAACGCCTTGGCGTCTGACGTCCATCGCTCAGGCTCGTCACGCTGGCCGAGGTACACCTCGTCGGAG
GAGTGCTTGGAGAGGATCTCGATGAGCGAGATGCCGATGATGGTCTGGATCTGGCTCGTGATGGTGTGGATGAAGCCGCGCTCCGGGTAGCGCTCCAGCT
CCTCGTACTCCTTGCTTCCGGGCTCCGGCATCCGGCGCCGGCTCACCGTGGGCCGGTTCGGCAGGTACCCCGCGTACGGGTACTGGCCGAAGTTCACGGC
GGCGTGCAGCGCCGACGCGATCCAGATGATGGTGGTGCAGCTTGATCCCGCCCTCGTACAGGTTGATGATGTCCTGGAACGAGTCGAACTCTTTGGGG