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Detailed information on CNT30394048


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677963Triticum turgidumSetaria viridis5.6320.1890.9144forward
CNT30224238Triticum turgidumHordeum vulgare21.1336.0386.67165forward
CNT30591783Triticum turgidumMusa acuminata12.9331.5684.16101forward
CNT30458221Triticum turgidumSaccharum spontaneum20.2353.0286.71158forward
CNT30684973Triticum turgidumTriticum urartu40.4684.2797.15316forward
CNT30361298Triticum turgidumSorghum bicolor17.2938.5786.67135forward
CNT30100848Triticum turgidumOryza rufipogon29.5861.1183.98231forward
CNT30594693Triticum turgidumEragrostis curvula12.9324.8891.09101forward

Expression of CNT30394048

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMVAQALISSATVCILGHHAASLRSPCPTSRTS

>peptide 2 (64 aa)
VSKIKKLELDPKTEQTEELPEVCQEKNNGGLDTIFGEQREHRNIDFIIGQKRREFFCTRRCINR*

>peptide 3 (70 aa)
MATTCFSMPSSLAPNRLNASCALASDVHAGVSCCPRYTSSEECLDRISISEMPTSAWNWLVMVRMKAFSG*

Sequence

>CNT30394048
GTCTCAAAAATAAAAAAACTTGAACTTGACCCAAAAACAGAGCAAACAGAGGAGTTACCGGAGGTTTGCCAAGAAAAAAACAACGGAGGGTTGGATACTA
TTTTTGGCGAACAGAGGGAGCATCGCAACATCGACTTCATTATTGGACAAAAAAGAAGGGAATTTTTCTGTACACGACGATGCATTAACCGGTAGGCAGT
AGCCAGCTGAGCTTCCGCATGCCGATCGGACCCGTCGTGCACACACGCATTATTGCCTTATTACTGAGATCATGGCAAGCATATAGCTAGTAGCTAGTAT
CCGGTGCAAGCAAGCAAGCAGAGATAGAGGTCCTCAGATGGAGATGCTGTTGGGGATGCCCCTGGCCGTGAGCCCCTCGGCCTGGCCGGTGTGGTCGGAG
GTGTTGGGGTAGAGCAGCATGTAGGGGAACTTGGCCGGCCCGGTGCGGTTCTTGAGCCGCGGGTCGCCGTTCATGGCCACCACCTGCTTCTCGATGCCCT
CCAGCCTCGCCCCGAACCGCCTGAACGCCTCCTGCGCCTTGGCGTCCGACGTCCACGCCGGCGTCTCGTGCTGCCCCAGGTACACCTCGTCCGAGGAGTG
CTTGGACAGGATCTCCATCAGCGAGATGCCCACCAGCGCCTGGAACTGGTTGGTGATGGTGAGGATGAAGGCCTTCTCCGGATGATGGTGGCGCAGGCCT
TGATCAGCTCCGCCACGGTGTGCATCTTGGGCCACCACGCCGCGTCCTTGAGGTCGCCGTGCCCGACCTCCCGCACCTCCT