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Detailed information on CNT30594693


BLAST search results

BLAST vs Swiss-Prot:
sp|P29250|LOX2_ORYSJ, E-value = 6e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224984Eragrostis curvulaHordeum vulgare29.0644.5390.68118forward
CNT30394048Eragrostis curvulaTriticum turgidum24.8812.9391.09101forward
CNT30250756Eragrostis curvulaAvena sativa91.3853.9280.05371forward
CNT30666056Eragrostis curvulaTriticum dicoccoides97.5441.6883.08396forward
CNT30458221Eragrostis curvulaSaccharum spontaneum44.3360.486.11180forward
CNT30344056Eragrostis curvulaEragrostis tef100.2543.8182.31407forward
CNT30361620Eragrostis curvulaSorghum bicolor65.7653.6180.9267forward

Expression of CNT30594693

Peptides detected in this lncRNA

>peptide 1 (37 aa)
RRRSTRACRAGRGRSRRRSGWTGSPVARCRRGPGTDW*

>peptide 2 (96 aa)
MVRTNTFSGLRSSSAYLSVPGFGIGSRLTDGRFGRYPAYGYCPKLTAACSAEAVQMMVAQAFTSSGTVCISGHHAASLRSPCPTSRTSFHHAFSSSS

Sequence

>CNT30594693
GGCGTCGGAGGTCCACTCGGGCGTGTCGCGCTGGCCGAGGTAGATCTCGTCGGAGGAGTGGCTGGACAGGATCTCCAGTAGCGAGATGCCGACGAGGGCC
TGGAACTGACTGGTGATGGTGCGCACGAACACCTTCTCCGGGTTGCGCTCCAGCTCCGCGTACCTGTCCGTGCCCGGCTTTGGCATCGGCAGCCGGCTCA
CGGACGGCCGGTTCGGGAGGTACCCGGCGTACGGGTACTGCCCAAAGTTGACGGCCGCGTGCAGCGCGGAGGCCGTCCAGATGATGGTGGCGCAGGCCTT
CACCAGCTCCGGCACCGTCTGCATCTCCGGCCACCACGCTGCGTCCTTGAGGTCGCCGTGCCCGACCTCGCGCACCTCCTTCCACCACGCCTTCAGCTCC
TCGTCG