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Detailed information on CNT30666056


BLAST search results

BLAST vs Swiss-Prot:
sp|P29250|LOX2_ORYSJ, E-value = 3e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692296Triticum dicoccoidesOryza sativa25.4730.9580.17242forward
CNT30678051Triticum dicoccoidesSetaria viridis21.3780.8881.77203forward
CNT30224238Triticum dicoccoidesHordeum vulgare17.1635.5992.02163forward
CNT30393652Triticum dicoccoidesTriticum turgidum46.7452.5486.04444forward
CNT30591783Triticum dicoccoidesMusa acuminata12.9538.4486.18123forward
CNT30250756Triticum dicoccoidesAvena sativa66.6392.0187.05633forward
CNT30458221Triticum dicoccoidesSaccharum spontaneum12.5339.9384.87119forward
CNT30684973Triticum dicoccoidesTriticum urartu12.8432.5393.44122forward
CNT30344056Triticum dicoccoidesEragrostis tef78.2179.9881.02743forward
CNT30361298Triticum dicoccoidesSorghum bicolor13.5836.8684.5129forward
CNT30100848Triticum dicoccoidesOryza rufipogon24.4261.3879.31232forward
CNT30594693Triticum dicoccoidesEragrostis curvula41.6897.5483.08396forward

Expression of CNT30666056

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPMMACIWLVMVRMNTFSGSRASSEYSSLSGSGIGRRLADGLLGW*

>peptide 2 (43 aa)
MMVAQALTSSATVFILGHHAASLRSPCPTSRTSFHHACSSTSL*

>peptide 3 (35 aa)
MILKARTPTSLHAGEQQCSSKYLIRWRCCWGCPWP*

>peptide 4 (29 aa)
MPSSLVPNRLNASSALASDVHSGVSRCPR*

>peptide 5 (83 aa)
MLASNNAPPNISLDGDAVGDAPGREPLGLTRVVGGVGVEQHIRKLGRPVAVLELGVSVQGHHLALDALQPRAEPLERLQCLGI*

>peptide 6 (95 aa)
MQRRPGPDDGGAGLDQLRHRLHLRPPRRVLEVAVPDLANLLPPRLQLHVALKHTVACVVDGKILCHPLLDGGPDSQPVHRIRVVLKQQPHFVRARW

Sequence

>CNT30666056
CCCATCACTTTATTAATATATAATTTGGAAGGGGAAAATTACATGGAACATACATTGACCAGTGACTACCCACGCACATAACACTTGGGTGTCAAATGAG
CACTGGTGTACTAGATTATTGAAGCAATGATCCTCAAAGCACGCACCCCAACATCTTTGCATGCTGGCGAGCAACAATGCTCCTCCAAATATCTCATTAG
ATGGAGATGCTGTTGGGGATGCCCCTGGCCGTGAGCCCCTCGGCCTCACCCGTGTGGTCGGAGGTGTTGGGGTAGAGCAGCATATACGGAAACTGGGCCG
GCCCGTTGCGGTTCTTGAGCTGGGGGTTTCCGTTCAAGGCCACCACCTGGCTCTCGATGCCCTCCAGCCTCGTGCCGAACCGCTTGAACGCCTCCAGTGC
CTTGGCATCTGACGTCCACTCCGGCGTGTCACGCTGCCCGAGGTAAATCTCATCGGAGGAATGCTTGGATAGGATCTCCAGCAGAGAAATGCCAATGATG
GCCTGCATTTGGTTGGTGATGGTGCGGATGAACACCTTTTCCGGGTCGCGGGCCAGCAGTGAGTACTCCTCGCTGTCTGGCTCAGGCATCGGACGACGGC
TCGCTGACGGCTTGTTGGGGTGGTAACCTGCGTACGGGTACTGCCCGAAGTTTACGGCGGCATGCAGCGCCGACCCGGTCCAGATGATGGTGGCGCAGGC
CTTGACCAGCTCCGCCACCGTCTTCATCTTAGGCCACCACGCCGCGTCCTTGAGGTCGCCGTGCCCGACCTCGCGAACCTCCTTCCACCACGCCTGCAGC
TCCACGTCGCTCTGAAGCACACTGTCGCTTGTGTAGTAGATGGCAAGATACTCTGTCACCCACTGCTCGATGGCGGTCCAGATAGCCAGCCCGTCCACCG
CATAAGGGTAGTCCTCAAGCAGCAACCGCACTTTGTGCGGGCTAGATGGG