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Detailed information on CNT30440443


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 7e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522354Aegilops tauschiiSetaria italica62.8339.9289.36404forward
CNT30641254Aegilops tauschiiNymphaea colorata65.3241.6387.38420forward
CNT30534267Aegilops tauschiiEucalyptus grandis63.340.3886.73407forward
CNT30554810Aegilops tauschiiOryza glaberrima53.552.7690.41344forward
CNT30664832Aegilops tauschiiTriticum dicoccoides98.2969.4597.63632forward
CNT3013900Aegilops tauschiiZea mays58.4863.7394.41376forward
CNT30345519Aegilops tauschiiEragrostis tef57.0863.2890.74367forward
CNT30369818Aegilops tauschiiOryza glumipatula63.4558.4586.27408forward
CNT30579870Aegilops tauschiiEchinochloa crusgalli63.340.9594.59407forward

Expression of CNT30440443

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (57 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPRWQGCSAHAPGWGCRGSRGRPR*

>peptide 3 (57 aa)
MHQAGVAEVVEAALAEDLGAGLEPHGLAELDAVAGEQLREDAAERAEHGPTAVDHLQL

Sequence

>CNT30440443
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGA
ATCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGC
CATGAAGTTGTCGGCCTAGAGGTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAG
GTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCC
TTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGATGGCAAGGATGCTCTGCGCATGCACCAGGCTGGGGTTGCCGAGGTAGTCGAG
GCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGAGC
GCGCCGAGCATGGCCCAACGGCAGTGGATCACCTCCAGCTCCC