Detailed information on CNT30522354


BLAST search results

BLAST vs Swiss-Prot:
sp|P12332|CB21_SILLB, E-value = 4e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534267Setaria italicaEucalyptus grandis36.863786.6373forward
CNT30298483Setaria italicaTriticum aestivum38.9363.6591.37394forward
CNT30393441Setaria italicaTriticum turgidum47.6361.4889.21482forward
CNT30440443Setaria italicaAegilops tauschii39.9262.8389.36404forward
CNT30664832Setaria italicaTriticum dicoccoides48.3253.7488.34489forward
CNT30129909Setaria italicaCorymbia citriodora48.2267.1385.86488forward
CNT30685554Setaria italicaTriticum urartu39.2360.6189.67397forward
CNT30345519Setaria italicaEragrostis tef32.5156.7286.93329forward
CNT30369818Setaria italicaOryza glumipatula48.3270.0690.59489forward

Expression of CNT30522354

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MLWGALLTVRRMVMRPPASAAAAGRETRAWPRKLVVWWSADAAIFCVSGEHDGAAAYWSVRLFSADRVVG

>peptide 2 (55 aa)
MSMHVPDALGSALDGAAHGDAAAGIGGGGGAGDQGLAEEAGGLVERRRGHLLRVR*

>peptide 3 (29 aa)
MAHREWITSSSRLRAKVSGSAESPAVSHP*

>peptide 4 (29 aa)
MMRRPWINHQETKATDDEHARTRCSGERS*

>peptide 5 (71 aa)
MGPLPVTMACTKNPNMENMARRPFLSSFTLSSAAVSGSSARPRWPGCSARAPGWGCPGSPARPRRRSARRP*

Sequence

>CNT30522354
GTTCACTCACGAATGGTACACCGTTGCATTGATTCATCATCAGCTGACATACGCATCTGTGCTTAGTTTACAATAATTTTACATCGTCGGGCACGTCCAG
GCAGCTGCTAGCTGGTCTGGTCTGGTCTGATCTGAAGAGCTCACGAGCACAAAGCAATACGCTGGCGCGTGCAACTACTACACGCCTACTCACGAGCAGA
GGGCACATCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCATGCGTTGTTGGCGACGGGGTCGGCGACGTGGTCGAAGAGGTTCTCGATGGGTCCCTT
GCCGGTGACGATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCCGGG
TCGTCGGCGAGGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGC
CTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTCTTGGCAAGGATCTCCGGGAACACGCACCCCAGCGCGCCGAGCATGGCCCACCGCGAGTGGATC
ACCTCCAGCTCGCGGTTGCGCGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACTTGG
GGCGGTCAGGGCCGTACCTGCACGTACGTAGCTGATGATGCGTCGTCCATGGATCAATCATCAAGAGACAAAAGCAACTGACGATGAGCATGCACGTACC
AGATGCTCTGGGGAGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCGCCGGCATCGGCGGCGGCGGCGGGGCGGGAGACCAGGGCCTGGCCGAGGAA
GCTGGTGGTCTGGTGGAGCGCCGACGCGGCCATCTTCTGCGTGTCCGGTGAGCACGACGGCGCTGCTGCCTACTGGTCAGTGAGATTGTTTTCGGCTGAT
CGAGTGGTGGGA