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Detailed information on CNT3013900


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 7e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440443Zea maysAegilops tauschii63.7358.4894.41376forward

Expression of CNT3013900

Peptides detected in this lncRNA

>peptide 1 (60 aa)
TINQQETKTTTIAQTWFILVYNANSSSRLAYAMQRETKDTHASRSINQSTYVHPLRSERQ*

>peptide 2 (71 aa)
MWSARFSSGPLPVTMAWTKKPNMENMARRPFLSSFTLSSAKASGSSARPRWRGCSARGSGWGCRGSPARPR*

>peptide 3 (33 aa)
MQCNVKQKTHMHLAASINPRTYTLSDPKDNEVA*

Sequence

>CNT3013900
CAACAATTAACCAGCAGGAAACAAAAACCACCACTATTGCACAAACATGGTTCATCTTAGTGTACAACGCCAACTCATCATCTCGACTTGCCTATGCAAT
GCAACGTGAAACAAAAGACACACATGCATCTCGCAGCATCAATCAATCCACGTACGTACACCCTCTCCGATCCGAAAGACAATGAAGTTGCATAGCATAG
CCGTTGAGCTTAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACTGGGTCAGCGATGTGGTCAGCGAGGTTCTCGAGCGGGCCC
TTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAAAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGG
GGTCGTCGGCCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGGGAGCCG
GCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGAGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAG