Detailed information on CNT30579870


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00827|CB48_MAIZE, E-value = 1e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534267Echinochloa crusgalliEucalyptus grandis55.7354.9687554forward
CNT30440443Echinochloa crusgalliAegilops tauschii40.9563.394.59407forward
CNT30664832Echinochloa crusgalliTriticum dicoccoides62.2768.0292.89619forward

Expression of CNT30579870

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVMRPSPKTSLAPVAGLLTRAREVRAMVAAAMSIGSDHSLLWMMRCSVLCSSVM

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSQP*

>peptide 3 (57 aa)
MACTKNPNMENMARRPFLISFTLSSAKASGSSARPRWPGCSARGPGSGCPGSPARPR*

>peptide 4 (63 aa)
YIKNLQLDAYFIDPVQNMRTNTLLVHSSLRSQGSHHTYLYTLQYIRIRTSTVHARDPTHGRFI*

>peptide 5 (95 aa)
ILKIYNWMHISLIPSRTCVQIHYWYTAACDPRAPITHTCTPCSTYEYVRLRYTHATPPTVASSRVATRHPHHSCPASSSLTCRGRSWWRRPMRCC*

Sequence

>CNT30579870
TATATTAAAAATTTACAACTGGATGCATATTTCATTGATCCCGTCCAGAACATGCGTACAAATACACTACTGGTACACAGCAGCCTGCGATCCCAGGGCT
CCCATCACACATACTTGTACACCCTGCAGTACATACGAATACGTACGTCTACGGTACACGCACGCGACCCCACCCACGGTCGCTTCATCTAGAGTAGCAA
CGCGTCATCCACACCACTCATGCCCAGCCTCGAGCTCGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCG
AGGTGGTCGGCGAGGTTCTCGAGTGGGCCTTTGCCGGTGACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCT
CCTTCACCTTGAGCTCCGCGAAGGCCTCCGGGTCGTCGGCGAGGCCCAGATGGCCAGGATGCTCTGCGCGTGGACCAGGCTCGGGTTGCCCAGGTAGTCC
AGCCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGGAGCTCCGGGAACACGCAGCCCA
GCGCGCCCAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTGTCCCAGCCGTA
GTCGCCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTACAGGACGCGGTCGGGCCCGTACCACGGGCTGCCGGACGCT
GCCGGTTTGGGCTTGGCAGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGACGTCCCTGGCGCCGGTCGCCGGCTTGCTGACGAGAGCGCGGGAGG
TGAGAGCCATGGTGGCGGCGGCCATGTCGATCGGATCAGATCACTCCTTGCTGTGGATGATGCGTTGCTCTGTGTTGTGTTCTAGTGTGATGAT