Detailed information on CNT30345519


BLAST search results

BLAST vs Swiss-Prot:
sp|P04783|CB25_PETSP, E-value = 1e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522354Eragrostis tefSetaria italica56.7232.5186.93329forward
CNT30393441Eragrostis tefTriticum turgidum53.139.2989.29308forward
CNT30555034Eragrostis tefOryza glaberrima60.5233.390.6351forward
CNT30440443Eragrostis tefAegilops tauschii63.2857.0890.74367forward
CNT30251114Eragrostis tefAvena sativa59.1432.8294.17343forward
CNT30472624Eragrostis tefSaccharum spontaneum60.5243.4495.73351forward
CNT3011490Eragrostis tefZea mays60.6939.2994.89352forward
CNT30129909Eragrostis tefCorymbia citriodora59.1447.1893343forward
CNT30596906Eragrostis tefOryza meridionalis60.6935.9691.19352forward
CNT30108138Eragrostis tefOryza longistaminata35.5225.4394.66206forward
CNT30577669Eragrostis tefOryza barthii35.5221.9494.66206forward
CNT30603587Eragrostis tefOryza punctata35.6940.7593.72207forward

Expression of CNT30345519

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

>peptide 2 (46 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARMLCAWIRLGLPR*

Sequence

>CNT30345519
TGCAGAAAGATGTCATCTCTGTAAATAAAAATTTACAGCTCCATGCTTATTTAATTTATTGAGTCATTCATCAGGCCCATCCAGAACATGAGCACAAATA
CACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTACTCGTACACCCACAGGTACAATAGTACATACGAATACGTACGTCGACTACGGTA
CACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAG
CGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGCACAAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTT
GAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGG
GACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCAGCAGCTCGGGGAAGACGCAGCCCAGCGC