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Detailed information on CNT30439030


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675011Aegilops tauschiiSetaria viridis16.9928.591.861forward
CNT30522288Aegilops tauschiiSetaria italica20.616.6189.1974forward
CNT30185854Aegilops tauschiiSecale cereale60.1727.9495.83216forward
CNT30295923Aegilops tauschiiTriticum aestivum103.0641.4391.35370forward
CNT30223765Aegilops tauschiiHordeum vulgare62.430.3185.27224forward
CNT30390919Aegilops tauschiiTriticum turgidum69.9240.1690.04251forward
CNT30662943Aegilops tauschiiTriticum dicoccoides69.9241.6989.64251forward
CNT30142867Aegilops tauschiiLolium perenne24.7913.4887.6489forward
CNT30683966Aegilops tauschiiTriticum urartu69.9246.5790.04251forward
CNT30721712Aegilops tauschiiTriticum spelta57.3865.8199.51206forward

Expression of CNT30439030

Peptides detected in this lncRNA

>peptide 1 (37 aa)
RIYTWSRTQSTHIHPSLASMQRVDRGKKRKLQALVDK*

Sequence

>CNT30439030
GAGAATTTACACATGGAGCCGTACACAAAGCACACACATACACCCATCACTCGCTAGCATGCAGCGAGTAGACCGAGGCAAGAAAAGAAAGTTACAAGCA
CTAGTAGATAAGTAGTACGAAGCTCAAGACAAACTACATGCAGCCTCAGACAGCAACGTACGCTATGCAGGATTAGATAACCAAAAGAGCAGCAAACATG
GCGGCGTCGCAGAACTTCCTGTCTTCAATTCTCTGGCCGTCGGCTCTTATTTAGCGGTGGTTGGCGCCGAGGCTTTTGGTGGCCAGGTTGCTCCCGGGGT
GGAAAACGCTCCGCCACACGCTGCCGCCACGCGGCGGCGTCGACGACGACGGCGTCACC