Detailed information on CNT30675011


BLAST search results

BLAST vs Swiss-Prot:
sp|P93017|DRMH1_ARATH, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639465Setaria viridisNymphaea colorata52.3412.8184.82112forward
CNT30183720Setaria viridisSecale cereale49.0712.9595.24105forward
CNT30223286Setaria viridisHordeum vulgare49.0713.2792.38105forward
CNT30439030Setaria viridisAegilops tauschii28.516.9991.861forward
CNT30229845Setaria viridisAnanas comosus46.7324.5789100forward
CNT30597116Setaria viridisOryza meridionalis22.436.6891.6748forward
CNT30149572Setaria viridisBrachypodium distachyon47.6615.8493.14102forward

Expression of CNT30675011

Peptides detected in this lncRNA

>peptide 1 (58 aa)
PVVDGGGVGLRAVEEVGAHALGGQVAPGVEHAAPHLLQHLRLPPTKVTTGHWLTALLC*

>peptide 2 (69 aa)
SRRRWGSWAAGGRRGWRPCSWWPGCSRGGTRCATPSPASSPSSNKGYYWPLAYCTAMLTRGRAPHHQRPG

>peptide 3 (52 aa)
MLLVARLLPGWNTLRHTFSSIFAFLQQRLLLATGLLHCYANERKSTAPPASGY

Sequence

>CNT30675011
CCAGTCGTAGACGGTGGGGGAGTTGGGCTGCGGGCGGTCGAAGAGGTTGGCGCCCATGCTCTTGGTGGCCAGGTTGCTCCCGGGGTGGAACACGCTGCGC
CACACCTTCTCCAGCATCTTCGCCTTCCTCCAACAAAGGTTACTACTGGCCACTGGCTTACTGCACTGCTATGCTAACGAGAGGAAGAGCACCGCACCAC
CAGCGTCCGGGTAC