Detailed information on CNT30185854


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30295069Secale cerealeTriticum aestivum51.7548.0893400forward
CNT30223727Secale cerealeHordeum vulgare21.3530.6194.55165forward
CNT30392031Secale cerealeTriticum turgidum69.2156.291.4535forward
CNT30439030Secale cerealeAegilops tauschii22.1247.6396.49171forward
CNT30662943Secale cerealeTriticum dicoccoides51.7566.4592.75400forward
CNT30683966Secale cerealeTriticum urartu51.7574.2193400forward
CNT30721471Secale cerealeTriticum spelta41.0177.3294.95317forward

Expression of CNT30185854

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MAASQKLLSTLSSSSADGSLLFSGGCSRGGKRSATRCRHAAASTTTTASPAWSGSSASTATASSPPLQLHLHQHPCKPPSVHIINPKNQSSG*

>peptide 2 (48 aa)
FYLLLTVLRLVFRALYCLLFSFINLVLLSKKNIPEKGKTCSEAVIILP*

>peptide 3 (38 aa)
MQRADRGKKRKLQALVDSSTKLKTNYMQPQTATYAMQD*

>peptide 4 (29 aa)
ILSSVDRSASSFSCIVLLIVFLHKSGVIV*

>peptide 5 (30 aa)
MERTQSTHIHTHHSLACSEQTEVRKESYKH*

Sequence

>CNT30185854
ATTTTATCTTCTGTTGACCGTTCTGCGTCTAGTTTTTCGTGCATTGTATTGCTTATTGTTTTCCTTCATAAATCTGGTGTTATTGTCTAAGAAAAATATA
CCAGAAAAAGGAAAAACTTGCTCTGAGGCTGTTATTATCTTACCATAGCAGGTGGCTAAACATTGAGAACACCACCCCCCACACACACGAGAATTTACAC
ATGGAGCGTACACAAAGCACACACATACACACCCATCACTCGCTAGCATGCAGCGAGCAGACCGAGGTAAGAAAAGAAAGTTACAAGCACTAGTAGACAG
TAGTACGAAGCTCAAGACAAACTACATGCAGCCTCAGACGGCCACGTACGCTATGCAGGATTAGATAACCAAAAGAGCAGCAAACATGGCGGCGTCGCAG
AAGTTGTTGAGCACCCTGTCTTCTTCTTCGGCCGACGGCTCGCTCTTATTTAGCGGTGGTTGCTCCCGGGGTGGAAAACGCTCCGCCACACGCTGCCGCC
ACGCGGCGGCGTCGACGACGACGACGGCGTCACCGGCGTGGTCGGGGTCGTCGGCATCGACTGCGACTGCTTCATCGCCTCCCCTGCAGCTGCACCTCCA
CCAACATCCATGTAAACCGCCATCAGTTCATATAATAAACCCAAAAAATCAATCCTCCGGTTAAACAGCAAAACTTCTTTTCAAGATCACCGGTACTTGA
CTGACCGCTAGTTCTTACGTCCTTCCTGGTAGTTTCAGGCCATGTCGGTACCTCTGGACTAACGTATACAAAC