CANTATAdb - search

Detailed information on CNT30142867

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30439030	Lolium perenne	Aegilops tauschii	13.48	24.79	87.64	89	forward
CNT30684067	Lolium perenne	Triticum urartu	15.45	30.63	88.24	102	forward

Expression of CNT30142867

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLLVSYIITNEKKAETCSQPVINCFAIGNYLSKH*

>peptide 2 (35 aa)
MASESSSSPSTALGGQVAPGVEDAPPYVATARRRR*

>peptide 3 (38 aa)
MNSWKHYSYAKSSSYALLISFRLFRCFCSLCLHELTYVN

Sequence

>CNT30142867
TTATGTTGCTCGTTTCATACATTATTACCAATGAAAAGAAAGCGGAAACTTGCTCTCAGCCTGTTATTAATTGTTTTGCGATAGGTAACTATCTATCTAA
ACATTGAAGAGATCACACACGCACGCACCGGCACGGGTAGTATTTACAGATGGAACGTGCACACACATACACGCATCAAAGTAGTACAGAGGAGTAGCGG
AAGTAGTACTGAAGCTTAGGACAAACAAACAACACGCAGCCTCGGACTGCAACGCAGGAGCAGGAACTAGGAAGGATTAGATAACCAAAAGGAGCAGCAA
ACATGGCGTCAGAGAGCTCTTCTTCTCCGTCCACGGCTCTTGGTGGCCAGGTTGCTCCCGGGGTGGAAGACGCCCCTCCATACGTTGCCACCGCGCGGCG
GCGTCGCTGAGGACGGCGTCACCGGGGTGGTCGGGGTCGTCGGAATCGACTTACTTCCCTCGCCTGTAGCTAGTGCTACTCCAGGAAAGATCCATGAAAA
TCAGCCGTCAGTTGAACAGAACAGAGCAGAACATAACACCGTATGAATTCTTGGAAACACTACTCTTACGCTAAGTCTAGTTCTTACGCTCTTCTTATTA
GTTTCAGGTTATTTCGCTGCTTCTGCAGCCTCTGCTTACATGAACTAACATATGTAAACT