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Detailed information on CNT30223765


BLAST search results

BLAST vs Swiss-Prot:
sp|O22611|DRM1_PEA, E-value = 7e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30439030Hordeum vulgareAegilops tauschii18.2737.687.41135forward
CNT30721712Hordeum vulgareTriticum spelta16.9139.9488125forward

Expression of CNT30223765

Peptides detected in this lncRNA

>peptide 1 (48 aa)
RLLLSYHSRLNIEKTTPPTRENLHMERTQSTHIHPSLASMRRAKSKLR*

>peptide 2 (51 aa)
MASSQIEVVDRAPPSSSSLAVVAPGPGLVAVKPGHQTYARTLHRYYFHACC*

>peptide 3 (86 aa)
MDHELAYVPVVDGGRVGLGAVEEVGAEALGGEVAPGLVEARLRPRPGHHVVPQLVQHLVGGSDRCKNLCHVLACRVLPPPIRSSALA

Sequence

>CNT30223765
TGAGGCTGTTATTATCTTACCATAGTCGGTTAAACATTGAGAAGACCACACCACCCACACGAGAGAATTTACACATGGAGCGCACACAAAGTACACACAT
ACACCCATCACTCGCTAGCATGCGGCGAGCAAAGAGCAAACTGAGGTAACAAAAGAAAGTTACAAGCACTAGTATAGTAGTACTGCTACTAAGCTTAGGA
GAAACTACATGCAGCCTCGGACAGCAACGTACGTACGCAGGATTTAGATAACCAAAAGAGCAGCAAACATGGCGTCGTCCCAGATCGAAGTTGTCGATCG
AGCACCCCCGTCTTCCTCTTCTTTAGCGGTGGTTGCTCCTGGTCCTGGTCTCGTCGCTGTAAAGCCTGGACATCAAACGTACGCACGTACGTTGCACCGT
TATTATTTCCATGCATGCTGCTAACCCGTTCCAAGCCCCAGTAGACAGTGCTATCAAAAACCCATTTTATATTGCGAGATGGATCATGAGCTAGCGTACG
TACCAGTCGTAGACGGTGGGAGAGTTGGGCTGGGGGCGGTCGAAGAGGTTGGCGCCGAGGCCCTTGGTGGCGAGGTTGCTCCCGGGCTTGTCGAGGCCCG
TCTCCGGCCGAGGCCCGGCCACCACGTCGTCCCACAGCTTGTCCAGCATCTTGTAGGTGGATCTGATCGGTGCAAGAACTTGTGTCACGTACTAGCTTGT
AGAGTACTGCCACCACCGATAAGATCAAGTGCACTGGCC