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Detailed information on CNT30434962


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XPS6|PSBM_WHEAT, E-value = 4e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Aegilops tauschiiSetaria viridis14.492190.05211reverse complement
CNT30515578Aegilops tauschiiJuglans regia7.934.1290.43115forward
CNT30179299Aegilops tauschiiSecale cereale22.4634.5399.69327forward
CNT30293440Aegilops tauschiiTriticum aestivum17.3864.8799.21253reverse complement
CNT30221321Aegilops tauschiiHordeum vulgare28.1630.4292.44410reverse complement
CNT30257590Aegilops tauschiiAvena sativa17.5144.8996.47255forward
CNT3010228Aegilops tauschiiZea mays6.4632.394.6894reverse complement
CNT30341167Aegilops tauschiiEragrostis tef16.5551.1795.02241forward
CNT30100227Aegilops tauschiiOryza rufipogon14.3549.4193.78209reverse complement
CNT30585624Aegilops tauschiiEchinochloa crusgalli16.9643.7293.52247forward

Expression of CNT30434962

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MYRTFFNHSSFLVEIMNWYNGSFLHYNLQYKSFLQE*

>peptide 2 (34 aa)
MEVNILAFIATALFILVPTSFLLIIYVKTVSQNN*

Sequence

>CNT30434962
CTCTATCTTTCTTTATGATGATACCATCCTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGTATTTTACCGGAATCCATACATAAATCG
TATTCCCTTTTTATTTCAGACCTCTTTTCCCCATCTCACTTCTACTGCTTATTTGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACAT
AATTGTATGTATAACTATAAGAAAAAGGAAGGGAAATTGTATAAGATTAAGAAAGTATAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGAAAA
AGTAGAAAAGGATTAAAAAAGAGGGAATTCCTAATCCAATCAAAAAACCCATTTTGGTCTTAGTGTGGATAGAGGATCTTCCTATGTTATACTATATAAC
TCTCATCCGTGAAATATAACTCTCATCCATGAATTGATTTGATAGATCCGATATTCATAATATTGAATTGATTCAGTATTATCAGAATGCAAGCCCTACC
CTTGAATTTACAAGATACCCCTTTTTCCTCTCCATGGGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGC
ATTTATTGCTACTGCACTGTTCATTCTAGTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCAATTA
ATCATTGAAGAAATTAAAAAGGGATTAAATAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAAGTGTGGTAGAAAGAACTACATATAG
TTTTTTCTACGACACTTTAGATTCTTTCTATTATATTATCTTTGAATCTACATAGAATAGATTAGTAGATTGAAATAGTTAAGTAGTCTAATTCAATTTC
TTTTTTCACTGCATCCACTTAATTTCAATCAGGTCAAAATAAAAAATCTAAGACAATTCTTGACCAAAGAATCCATGGAAGGAAAGAAAAATAATATTAA
GAATAGACTATAGTAAAAAGTAAAAGGAAATGGAAAATGTGTGATATGCCGTGAATAGTTCCGTGGAAGAAAGTCTAATTTTCTTATGTATAGAACTTTT
TTTAACCATTCGTCATTTCTAGTAGAAATTATGAATTGGTATAATGGCTCTTTCTTACATTACAACTTACAATACAAGAGTTTCTTACAGGAGTGAAACA
AAATTAAAGAAAAAGATTAAAGAATAACGTTTGACAAAATGATTAATGCAAAATGATCCATTAATGAAAATAATTGATACAACAATTTGATTACTTAATC
AATTAGTAGTATCCCTAGAGTCCACTCCTTCCCCATACTACTAGTGAAAGAGAAAATGTAAAGACTACCATTAAAGTAGCCCAAGCGAGACTTACTATAT
CCATCTAAATTATGTCTCCTATTTCTATGAAGGGATTATTCTATTCTACTATTGAT