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Detailed information on CNT30179299


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XPS6|PSBM_WHEAT, E-value = 2e-14

BLAST vs NONCODE:
NONZMAT003164, E-value = 9e-176

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Secale cerealeSetaria viridis22.282190.05211reverse complement
CNT30293440Secale cerealeTriticum aestivum26.7264.8798.81253reverse complement
CNT30221321Secale cerealeHordeum vulgare26.7218.7798.42253reverse complement
CNT30434962Secale cerealeAegilops tauschii34.5322.4699.69327forward
CNT30257590Secale cerealeAvena sativa26.9344.8996.47255forward
CNT3017973Secale cerealeZea mays25.9818.1794.31246reverse complement
CNT30341167Secale cerealeEragrostis tef25.4551.1795.02241forward
CNT30585624Secale cerealeEchinochloa crusgalli26.0843.7293.52247forward

Expression of CNT30179299

Peptides detected in this lncRNA

>peptide 1 (44 aa)
SRSIKIKKDTHTICGLVEFRILYYSIFLYDDTILILISYSTLME*

>peptide 2 (34 aa)
MEVNILAFIATALFILVPTSFLLIIYVKTVSQNN*

Sequence

>CNT30179299
CTCCCGATCGATAAAGATAAAGAAAGACACACATACGATATGTGGATTAGTAGAATTTAGGATATTATATTACTCTATCTTTCTTTATGATGATACCATC
CTCATCTTAATTTCCTATTCCACTCTTATGGAATAGAGTACCGGTATTTTACCGGAATCCATACATAAATCGTATTCCCTTTTTATTTCAGACCTCTTTT
CCCCATCTCACTTCTACTGCTTATTTGGATGTCTATGTGACCCATAGAAAGTTGGTCATATAATACATACATAATTGTATGTATAACTATAAGAAAAAGG
AAGGGAAATTGTATAAGATTAAGAAAGTATAAGATTAAGAAAGCTCGTGGGTTAGAGATATAGAAAAGAAAAAGTAGAAAAGGATTCAAAAAGAGGGAAT
TCCTAATCCAATCAAAAATCCCATTTTGGTCTTAGTGTGGATAGAGGATCTTCCTATGTTATACTATATAACTCTCATCCATGAAATATAACTCTCATCC
ATGAATTGATTTGATAGATCCGATATTCATAATATTGAATTGATTCAGTATTATCAGAATGCAAGCCCTACCCTTGAATTTACAAGATACCCCTTTTTCC
TCTCCATGGGATTACATCCCGAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCACTGTTCATTCTA
GTTCCTACTTCTTTTTTACTTATTATTTATGTAAAAACAGTCAGCCAAAATAATTAATTGGAATTCCAATTAATCATTGAAGAAATTTAAAAGGGATTAA
ATAAAAAAAATCCAAGTCTTAAATGAAAGGATCTGGTTGGAATCTTAAAGTGTGGTAGAAAGAACTATATGTAGTTTTTTCTACGACACTTTAGATTCTT
TCTATTATATTATCTTTTATTCTACATAGAATAGATTAGTAGATTGA