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Detailed information on CNT30585624


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3A9|PSBM_SACHY, E-value = 3e-15

BLAST vs NONCODE:
NONZMAT003164, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Echinochloa crusgalliSetaria viridis62.4835.1290.65353reverse complement
CNT30179299Echinochloa crusgalliSecale cereale49.229.3693.88278forward
CNT30293440Echinochloa crusgalliTriticum aestivum30.6244.3693.06173reverse complement
CNT30434962Echinochloa crusgalliAegilops tauschii49.219.0993.88278forward
CNT30257590Echinochloa crusgalliAvena sativa71.6871.389.88405forward
CNT3017973Echinochloa crusgalliZea mays73.9830.8794.02418reverse complement
CNT30341167Echinochloa crusgalliEragrostis tef72.0486.4192.14407forward

Expression of CNT30585624

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MEVNILAFIATALFILVPTAFLLIIYVKTASQND*

>peptide 2 (33 aa)
KKKEGKLDKIRKILFWVIHGYTYIKAKVEKNEK*

>peptide 3 (38 aa)
MKNRIEGVSNPIKKPILVLVWIKDLPMLYYSTIKHELI*

Sequence

>CNT30585624
AAGAAAAAGGAAGGGAAATTGGATAAGATAAGAAAGATTTTATTTTGGGTTATACATGGTTATACATATATAAAAGCAAAAGTGGAAAAGAATGAAAAAT
AGAATAGAGGGAGTTTCGAATCCAATCAAAAAACCTATTTTGGTCTTAGTATGGATAAAGGATCTTCCTATGTTATATTATTCTACTATCAAGCATGAAT
TGATTTGATAGATCCAATATTCATAATATTGGATTGATTCAGTATTATCAGAATGTAAGTCCTCCCCTGAAATTTACAGGATACCCCTTTTTCCTCTCTA
TGGGATTACATCCCGAGTTATTGTGAAAAAAAAAAATCAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACCGCATTGTTCATTCTAGTTCCT
ACTGCCTTTTTACTTATTATTTATGTAAAAACAGCCAGCCAAAATGATTAATTGGAATTCCAATTAATCATTGAAGAAATGAAAATGAAAAAGGGATTAA
AGAAAATACAAATCCAAGTTTTAAATGAAAGGATCTGGTTGGAATCATAAAGTGTGGTAGAAAGA