Detailed information on CNT30100227


BLAST search results

BLAST vs Swiss-Prot:
sp|B5LMM3|PETN_CICAR, E-value = 2e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515578Oryza rufipogonJuglans regia27.1934.1292.17115reverse complement
CNT30202193Oryza rufipogonPisum sativum29.3111.1690.32124forward
CNT30221158Oryza rufipogonHordeum vulgare76.1251.4490.99322forward
CNT30434962Oryza rufipogonAegilops tauschii49.4114.3593.78209reverse complement
CNT3017973Oryza rufipogonZea mays48.2315.0796.57204forward
CNT30606608Oryza rufipogonGossypium raimondii31.2118.1687.12132reverse complement
CNT30585671Oryza rufipogonEchinochloa crusgalli50.8315.9196.74215forward

Expression of CNT30100227

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDIVSLAWAALMVVFTFSLSLVVWGRSGL*

>peptide 2 (36 aa)
INKKGLCIIFILNAPQFYQKYSKNLLNSTRNTLRIC*

Sequence

>CNT30100227
TTATTAATAAGAAAGGGCTATGTATCATATTTATACTTAATGCTCCCCAATTCTACCAGAAATACTCTAAGAATTTGTTAAATTCTACCAGAAATACTCT
AAGAATTTGTTAAGAGTAAATTCTTTGAACTGATTCATCCATAGTTTTAGGTCAGAACCCCTTTTTGACTCTGTACCCTTGATTCTACTATGATTATTCA
TCAATAGTAGAATAATTCCTTCATAGAAATAGGAGACATAATTTACATGGATATAGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCT
CTTTCACTAGTAGTATGGGGGAGGAGTGGACTCTAGGGATACTACTAATTGATTGAGTAGTCGAATTGTTGTATCAACTCTTTTCTTTAATTGACCGTTT
TGCATTAATCATTTTGCCGAACT