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Detailed information on CNT30676604


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179299Setaria viridisSecale cereale2122.2889.57211reverse complement
CNT30293440Setaria viridisTriticum aestivum13.3334.3691.79134forward
CNT30221321Setaria viridisHordeum vulgare42.1931.4583.73424forward
CNT30434962Setaria viridisAegilops tauschii50.7535.0380510reverse complement
CNT30257903Setaria viridisAvena sativa47.2666.5385.68475reverse complement
CNT3017973Setaria viridisZea mays39.129.0390.33393forward
CNT30341167Setaria viridisEragrostis tef34.4373.4688.44346reverse complement
CNT30585624Setaria viridisEchinochloa crusgalli35.1262.4890.08353reverse complement

Expression of CNT30676604

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MYNPKSLLSYPISLPFYYSYTYNYVCMYYMTHRKWVT*

>peptide 2 (44 aa)
MNNAVGINVRILTSITSFFHNNSGCNPIERKMGYPVNLRGGLAF*

Sequence

>CNT30676604
TTGAAATTAAGTGGATGCAGTGGAAAAAGCAGTTGAATTAGACTACTATTTCAATATGCTAATCAATTCTATGTAGATTCAAGATAATATAATAGAGAGA
ATCTAAAGTGCAGTAGGAACTAGAATGAACAATGCAGTAGGAATAAATGTGAGAATATTGACTTCCATAACCTCTTTTTTTCACAATAACTCGGGATGTA
ATCCCATAGAGAGGAAAATGGGGTATCCTGTAAATTTAAGGGGAGGACTTGCATTCTGATAATACTGAATCAACTCAATATTATGAATATTGCATCCATC
AAATCAATTCATGGTTGATAGTGGAATAATATAACATAGCATAGGAAGATCCCTTATCCATACTAAGACCAAAATTCATTTTTTGATTGGATTCGAAACT
CCCTCTACTCCATTTTTCATTCTTTTCTACTTTTGCTTTTCTATATGTATAACCCAAAATCTTTGTTATCTTATCCAATTTCCCTTCCTTTTTATTATAG
TTATACATATAATTATGTATGTATGTATTATATGACCCATAGAAAGTGGGTCACATAGACATCCAAATAAGCAGTGGAAGTAGAAATGAGATGGAGAAAA
GAGGATTTTAAATAAAAAGGATCCAATATTTCAATTTAGGAAAAAGAGCATTTGCTTGGTTTTTAGTTTATTAGGTTACTATCAATATCTACTTTTTGGG
GTCTAAAGATGAGAGCGGATCTATAAGGAGTCAGCAAATGGAGTGAGAATGAGGTAGATTCTTTCCAATTATTCATTGAACATACACAAACAAAGTTGGA
ACTAGAAAATAGAAGGGGTGTGGTTTAACCCCCAAAACAAAAAGGAACTAATTAGATAAAATTCATTCTCTAACAATAAACGAATGCGGTTTATGTATGG
ATTCCGGTAAAATACCGGCACTCTATTCCATACGAGTCGAATAGTAAGTTAAGATGATGACGGTATCATCATAAAAATAGAGTAATACCCTAAATTATAC
TAATC