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Detailed information on CNT30293440


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Triticum aestivumSetaria viridis44.3617.2189.02173forward
CNT30179299Triticum aestivumSecale cereale64.8726.7298.81253reverse complement
CNT30221321Triticum aestivumHordeum vulgare46.1513.3598.33180forward
CNT30434962Triticum aestivumAegilops tauschii64.8717.3899.21253reverse complement
CNT30257903Triticum aestivumAvena sativa46.4125.3594.48181reverse complement
CNT3017973Triticum aestivumZea mays45.6413.1593.82178forward
CNT30341167Triticum aestivumEragrostis tef44.8737.1594.29175reverse complement
CNT30585624Triticum aestivumEchinochloa crusgalli44.3630.6293.06173reverse complement

Expression of CNT30293440

Peptides detected in this lncRNA

>peptide 1 (58 aa)
ENIDFHNLFIFYFHNNSGCNPMERKKGYLVNSRGGACILIILNQFNIMNIGSIKSIHG*

>peptide 2 (29 aa)
MGFLIGLGIPSFLILFYFFFSISLTHELS*

>peptide 3 (29 aa)
RILTSITSLFFIFTITRDVIPWRGKRGIL*

Sequence

>CNT30293440
CGAGAATATTGACTTCCATAACCTCTTTATTTTTTATTTTCACAATAACTCGGGATGTAATCCCATGGAGAGGAAAAAGGGGTATCTTGTAAATTCAAGG
GGTGGGGCTTGCATTCTGATAATACTGAATCAATTCAATATTATGAATATCGGATCTATCAAATCAATTCATGGATGAGAGTTATATTTCACGGATGAGA
GTTATATAGTATAACATAGGAAGATCCTCTATCCACACTAAGACCAAAATGGGTTTTTTGATTGGATTAGGAATTCCCTCTTTTTTAATCCTTTTCTACT
TTTTCTTTTCTATATCTCTAACCCACGAGCTTTCTTAATCTTATACTTTCTTAATCTTATACAATTTCCCTTCCTTTTTCTTATAGTTAT