Detailed information on CNT30341167


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3A9|PSBM_SACHY, E-value = 1e-15

BLAST vs NONCODE:
NONZMAT003164, E-value = 1e-167

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Eragrostis tefSetaria viridis73.4634.4388.44346reverse complement
CNT3098653Eragrostis tefSolanum tuberosum23.1412.1988.07109forward
CNT30179299Eragrostis tefSecale cereale59.4529.5794.64280forward
CNT30293440Eragrostis tefTriticum aestivum37.1544.8794.29175reverse complement
CNT30434962Eragrostis tefAegilops tauschii59.4519.2394.64280forward
CNT30257590Eragrostis tefAvena sativa75.1662.3291.81354forward
CNT3017973Eragrostis tefZea mays86.8430.2193.89409reverse complement
CNT30121209Eragrostis tefCitrus clementina22.9319.8588.89108reverse complement
CNT30585624Eragrostis tefEchinochloa crusgalli86.4172.0492.38407forward

Expression of CNT30341167

Peptides detected in this lncRNA

>peptide 1 (65 aa)
KKKKKKKKGKLDKKDSWLYIYIEKQKSKRMKNRGVQNPIKKSILVLVWIRDLPMFYYSTINHELI*

>peptide 2 (34 aa)
MEVNILAFIATALFILVPTAFLLIIYVKTASQND*

>peptide 3 (34 aa)
MQVLPLNLQDTPFSSPWDYIPSYCEKKKIKRLWK*

Sequence

>CNT30341167
AAAAAAAAAAAAAAAAAAAAGAAAGGGAAATTGGATAAGAAAGATTCTTGGCTATACATATATATAGAAAAGCAAAAGTCGAAAAGGATGAAAAATAGAG
GGGTTCAGAATCCAATTAAAAAATCTATTTTGGTCTTAGTATGGATAAGGGATCTTCCTATGTTCTATTATTCCACTATCAACCATGAATTGATTTGATA
GATCCTATATTCATAATATTGAATTGATTTAGTATTATCAGAATGCAAGTCCTCCCCTTGAATTTACAGGATACCCCCTTTTCCTCTCCATGGGATTACA
TCCCGAGTTATTGTGAAAAAAAGAAAATAAAGAGGTTATGGAAGTAAATATTCTCGCATTTATTGCTACTGCATTGTTCATTCTAGTTCCTACTGCCTTT
TTACTTATTATTTATGTAAAAACTGCCAGCCAAAATGATTAATTGGAATTCCAATTAATCATCGTAATAAC